Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq43510 205 1e-47 seq2347 140 4e-28 seq60516 125 8e-24 seq19617 84.2 3e-11 >seq43510 Length=3912 Score = 205 bits (226), Expect = 1e-47 Identities = 232/310 (75%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 146931 GTGGTTG-AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 ||||||| || || | |||||| || ||||| |||||||| || || ||| |||| Sbjct 581 GTGGTTGGAGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACGCCCAGGC 640 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 |||| | || |||||||||| ||| ||||||| ||||||||| |||||||| || || | Sbjct 641 CGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGC 700 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGT 147109 ||||| ||||| || | ||||||||||||||| ||||| |||||| |||||| Sbjct 701 CCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGACCACGT 760 Query 147110 AAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCC 147169 | |||||| ||||| ||||||||||| ||||||||| ||||| || || ||||| Sbjct 761 AGAACTGGAACAGGCTGTGGCACGGCATCAGCGCCATCTGCGGCAGTTCGGCCACGTTCC 820 Query 147170 AGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACC 147229 |||| || ||||||||||| || || || | ||| ||||| || | | |||| Sbjct 821 AGGCGCTGATCACCAGCCGCCGCGAATCCGGATTGCGCTTGATCTCGTCCACCAGCCACT 880 Query 147230 TCAGCTGGTC 147239 || |||||| Sbjct 881 GCATCTGGTC 890 >seq2347 Length=4848 Score = 140 bits (154), Expect = 4e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 146971 AAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTG 147030 || || ||||||| || ||||| || ||||||||||| ||| ||||||| |||||| Sbjct 1528 AATTCGCCCGGCTGCAGCCCGGTGACCTGGGCCACCATCAGGGTCAGCAGCGCATAGCTG 1587 Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090 || ||||||||||| || || ||| ||||| | || | ||| ||||||||||| Sbjct 1588 GCGATGTTGAAGGGCACGCCGAGGAAGATGTCGGCGGAGCGCTGATACAGCTGGCAGCTC 1647 Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 || || ||||| || || |||||| |||| |||||||||||||||||||| || Sbjct 1648 AGGCGACCATCGGCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGCGCCATCTCG 1707 Query 147151 GGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCC 147190 || || || |||||||||||||| | ||| |||| Sbjct 1708 TCCACCAGGGCCGGATTCCAGGCCGAGACGATCAGGCGCC 1747 >seq60516 Length=573 Score = 125 bits (138), Expect = 8e-24 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 147024 GTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTG 147083 ||||||||| |||||||| || || |||||| ||||| || | |||||||||||| Sbjct 573 GTAGCTGGCGATGTTGAACGGCACGCCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTG 514 Query 147084 GCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGC 147143 ||| ||||| |||||||| || || |||||| |||| |||||||||||||| || Sbjct 513 GCAGCTGAGCTTGCCGTCGGCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGGGC 454 Query 147144 CATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTT 147203 ||| || || ||| || |||||||||||||| | |||||| | || ||||| Sbjct 453 CATCTCGTCCACCAGCGCCGGATTCCAGGCCGAGACGATCAGCCGGCGCGAGTCCGGGTT 394 Query 147204 CCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTC 147239 ||||| ||| ||||| | | || | |||||| Sbjct 393 -CTCTTGATCATCTCGATCAGCTTGCTGATCTGGTC 359 >seq19617 Length=1959 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC-GCAGTCCACGTACCTGGCCCCAAA 147290 ||||| || ||||||| |||| ||||| ||| ||| ||||||||| || ||||| Sbjct 1798 AGCTGATCGACGCCCTTGCCCGTGTAGTCCGTCTTTGCA-TCCACGTACTCTGCGCCAAA 1740 Query 147291 GTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCC 147350 ||||| ||| ||||| |||||||| || ||||||||||| || | ||||| || ||| Sbjct 1739 GTGCCGCCATTGGAACCCGTACACGGGTCCCAGGTCGCCTACCTCGCGGTGCGTGAGGCC 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582537643920000