Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9999 185 1e-40 seq8712 170 3e-36 seq97599 158 2e-32 seq95708 143 4e-28 seq51865 143 4e-28 seq11762 123 4e-22 seq108015 105 1e-16 seq44974 91.5 2e-12 >seq9999 Length=8348 Score = 185 bits (204), Expect = 1e-40 Identities = 281/396 (71%), Gaps = 7/396 (2%) Strand=Plus/Minus Query 2133441 CGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGC 2133500 || ||||| || ||||||| |||| ||||| ||||||||||||| | | | | || Sbjct 1183 CGGGAGGGGCTGGTGGACACGCCCAAGCGCGCGGCCAAGGCCATGCAGTACCTCTGCCGT 1124 Query 2133501 GGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTT---TGACGAGGCGTCG 2133557 ||| | | ||| |||| || | || |||| || ||||| | ||| | | Sbjct 1123 GGCTACAACCAGACGCTGGAAGAGGTGGTGGGCGAGGCGCTCTTCACTTCCGA--CAACA 1066 Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 | |||||||||| ||| | || || | | |||| |||||||||||||| ||||| Sbjct 1065 G-CGAGATGGTGCTGGTCAAGAACATCGAGCTGTACTCCCTGTGCGAGCACCACATGCTG 1007 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGC 2133677 ||||| ||||||||||||||||| | |||| ||||| ||||||| | |||| ||| | Sbjct 1006 CCCTTCATCGGCAAGGCCCACGTCGCCTACATGCCCAAGGGCAAGGTGCTCGGCCTGTCC 947 Query 2133678 AAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACG 2133737 ||| | |||| |||||||||||||| || || | || | ||||| || | || Sbjct 946 AAGGTGGCGCGTATCGTCGACATGTTCGCCCGTCGGCTGCAGATCCAGGAAACA-TGACC 888 Query 2133738 CGCCAGATCGCCGAGAGCGTGAGCCAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTC 2133797 || |||||||||||| | | |||||||| || || ||| |||| || ||| || Sbjct 887 CGGCAGATCGCCGAGGCCATCGAACAGGTTACCGGTGCCGCCGGGGTCGCGGTGGTCATC 828 Query 2133798 GAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTG 2133833 |||| | |||||||||| || |||||||||||| Sbjct 827 GAGGCGCAGCACATGTGCATGATGATGCGCGGCGTG 792 >seq8712 Length=1748 Score = 170 bits (188), Expect = 3e-36 Identities = 347/507 (68%), Gaps = 25/507 (5%) Strand=Plus/Minus Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739 |||||||||||| |||||| ||||||| | ||| | ||||||| |||| ||||| Sbjct 813 AGCACAAGGAGGAACTCGACTCTGCCATTGTCTACGACAGAGACTTCAACTACCAGTACT 754 Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799 |||| | ||| || || ||||| || ||| | || | | ||||||| Sbjct 753 TTGGCTTCAAGACTCTGGAGCGATCCTATCTCCTCAAGCTCAACGGCAAGATTGTCGAGC 694 Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859 | || ||| | ||| | |||||||| ||| | || | |||| || |||| Sbjct 693 GACCACAGCACATGATTATGCGTGTTGCCGTCGGTA--TCTGGG------GA----GACA 646 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTCA 259918 | ||||||| || || | |||||| | ||||||| |||| || |||||| Sbjct 645 AC---CTGGAGCGTGTCCTGGAAACCTACAACCTCATGTCG-AGCAAATTCTTCACCCAC 590 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTT 259975 || ||||||| || || || || || ||||| | ||| || | || || ||||| Sbjct 589 GCCTCGCCCACACTATTCAACGCTGGTACGCCACAATGCCAGCTG---TCATCCTGCTTC 533 Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035 || | ||| |||||| || ||||| |||||||||||||| |||| | |||||| Sbjct 532 CTTGTCGAC-TGAAGGATGACAGCATCGAAGGCATCTATGACACCCTCAGAC-GTGCGCC 475 Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095 | ||||||||| ||| ||||||||||| | || ||| | || ||| | ||| Sbjct 474 ATGATCTCCAAGATGGCTGGCGGCATCGGCCTGAACGTCCACCGCATTCGTGCCACTGGC 415 Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 | ||| | || |||||||||||| || |||||| | || |||||||||||||| || Sbjct 414 TCGTACATTGCCGGCACCAACGGCACCTCAAACGGCGTCGTTCCCATGCTTCGCGTGTTC 355 Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || | |||||||||||| Sbjct 354 AACAACACCGCCAGATACGTCGACCAG 328 >seq97599 Length=510 Score = 158 bits (174), Expect = 2e-32 Identities = 278/397 (70%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 2133441 CGCGAGGGCCTCCTGGACACACCCATGC-GCGTGGCCAAGGCCATGGTGGAGCGCACGCG 2133499 || ||||| || |||| || |||| || | | ||||||||||||| | | | || Sbjct 100 CGGGAGGGGCTGGTGGATACGCCCAAGCCGGGCGGCCAAGGCCATGCAGTACCTTTGCCG 159 Query 2133500 CGGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGG-CGTCGG 2133558 |||| | || ||| |||| || | || |||| || ||||| | || | | | Sbjct 160 CGGCTACAGCCAGACACTGGAAGAAGTGGTGGGCGAGGCGCTCTTCACCTCGGACAACAG 219 Query 2133559 ACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGC 2133618 |||||||||| ||| | || || | | |||| ||||||| |||||| |||||| Sbjct 220 -CGAGATGGTGCTGGTCAAGAACATCGAGCTGTACTCCCTGTGCGAACACCACATGCTGC 278 Query 2133619 CCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCA 2133678 |||| |||||||||||||| || | |||| ||||| |||||| | | || ||| || Sbjct 279 CCTTCATCGGCAAGGCCCATGTCGCCTACATGCCCAGCGGCAAGGTGCTGGGGCTGTCCA 338 Query 2133679 AGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGC 2133738 || | ||||||||||||||||||| || ||| | || | |||||| | || | Sbjct 339 AGGTGGCGCGCATCGTCGACATGTTCGCCCGTCGCCTGCAGATCCAGGAGAACATGACCC 398 Query 2133739 GCCAGATCGCCGAGAGCGT-GAGCCAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTC-CT 2133796 |||||||||||||| | | ||| |||| || || || |||||| | || ||| | Sbjct 399 GCCAGATCGCCGAGGCCATCGAGGAAGGTCACCGGTGCCGCCGGCGT-GCGGTGGTCAGT 457 Query 2133797 CGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTG 2133833 ||||| | |||||||||| || |||||||||||| Sbjct 458 CGAGGCGCAGCACATGTGCATGATGATGCGCGGCGTG 494 >seq95708 Length=954 Score = 143 bits (158), Expect = 4e-28 Identities = 213/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||| ||||| ||| | || | Sbjct 348 GATTTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGAC-GCCGAAGAGATTGATC 291 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | || | | | ||| || |||| |||||||||| | |||||| Sbjct 290 TCTCCAAAGATCTGCACGATTGGAACAACCGTCTGAACGACGACGAGAAATACTTCATCT 231 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| ||||||| || || ||| ||| || ||||| || ||||||| ||| | Sbjct 230 CCCACATCCTCGCATTCTT-CGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAG 172 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | |||||||||| ||||||| || |||| |||||||| ||||||||| Sbjct 171 CGTTTCAGCGGAGAGGTCCAAGTGCCAGAAGCTCGTTGCTTTTACGGATTCCAGATCATG 112 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || |||||||||||||| || || ||||| ||| |||| || ||||| |||| || Sbjct 111 ATGGAAAACATCCACTCGGAGACTTACTCCCTCTTGATTGATACCTATATCAAAGA 56 >seq51865 Length=821 Score = 143 bits (158), Expect = 4e-28 Identities = 155/198 (78%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| ||||||| | || | ||| |||| || || | |||| Sbjct 557 TGCACACCGACTTTGCCTGCCTGCTCTTCTCGCTCCTCAACAACCGCCCCTCCAAAGACG 616 Query 1456512 T-GCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGT 1456568 | ||||| |||||| ||||||||||||||||||||| ||||| |||| ||| Sbjct 617 CCGTGCAAGCC-ATCATCACCGAGGCCGTCGAGATCGAGAAGGAGTTCCTGTC--CGACG 673 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 | ||||| ||||| ||||||||||||||||| ||||||||||||||||||| | || Sbjct 674 CCCTGCCTTGTGCGCTGCTCGGCATGAACGCCACC-CTCATGTGCCAGTACATTG-AGTT 731 Query 1456629 TGTCGCCGACCGCCTGCT 1456646 |||||||||||| ||||| Sbjct 732 TGTCGCCGACCGGCTGCT 749 Score = 136 bits (150), Expect = 6e-26 Identities = 148/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 ||||||||||||| |||||| |||||||||||||| ||| |||||| || |||| Sbjct 56 CGACGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTT-GCCGCCTCGGACGGCA 114 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||||||| ||| || ||||| | ||||| ||| | |||||||| || | Sbjct 115 TCGTCAACGAGAACTTGGTCGAGCGCTTCTCTAGCGAGGTACAAATCCCAGAGGCGCGCT 174 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||| ||||||||| || || ||| ||||||| || || |||||| | || | Sbjct 175 GCTTCTACGGCTTCCAGATCATGATGGAGAACGTCCACTCGGAGACGTACTCGTTGCTCA 234 Query 1456049 TCGACACCTACGTCA 1456063 ||||||||||| ||| Sbjct 235 TCGACACCTACATCA 249 Score = 89.7 bits (98), Expect = 7e-12 Identities = 139/194 (72%), Gaps = 11/194 (6%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA----ACAAGGAGGGCCTCGACACTTTGCC 1456178 |||||||| |||||||| || ||||||| |||| | ||| || ||||||| Sbjct 366 AAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAA----CTCCAC-CTTTGCC 420 Query 1456179 GAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCC 1456237 | || || || | || || ||| | || || ||||| ||| ||| |||| | || Sbjct 421 AACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTCC 480 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTAT 1456297 ||||| |||||||||||||| |||||||||||||| | || |||| |||||| | || Sbjct 481 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGG-CCTCACCTTTTCCAACGAGCTCAT 539 Query 1456298 CAGTCGCGACGAAG 1456311 | || ||||||| Sbjct 540 CTCGCGTGACGAAG 553 >seq11762 Length=7374 Score = 123 bits (136), Expect = 4e-22 Identities = 156/205 (76%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 2144659 GCCGGCGCTCGACCTCGCGGGCATGGTCATGGCCAGCGACGCCTACTTTCCCTTTCCCGA 2144718 |||||| || | | | || ||| |||||||||| ||||||| ||| ||||| | || Sbjct 6779 GCCGGC-CTGGCCGTGGCCGGCGCGGTCATGGCCTCGGACGCCTTCTTCCCCTTCCGTGA 6721 Query 2144719 CGGCC-CGAGCAAGGCCATCGCCGGCGGCGTCGTCGCCATCGTGCAGCCGGGCGGCTC-A 2144776 |||| ||| ||| ||| ||| |||| || ||| | | |||||||||||||| | Sbjct 6720 CGGCATCGA-CAACGCCGCGGCCAACGGCATCACCGCGGTGATCCAGCCGGGCGGCTCCA 6662 Query 2144777 CGCGGCGGCGACAAGCCTCGATCGCCGTCTGCGACGAGGCCGGCGTCGCCATGGTCTTTA 2144836 ||| || || | || || ||||||| | |||||| |||||| ||||||||||||||| Sbjct 6661 TGCG-CGACGCCGAGG-TC-ATCGCCGCCGCCGACGAAGCCGGCATCGCCATGGTCTTTA 6605 Query 2144837 CCGGCATGCGCCATTTCCGTCACTA 2144861 ||||||||||||| ||||| ||||| Sbjct 6604 CCGGCATGCGCCACTTCCGCCACTA 6580 >seq108015 Length=311 Score = 105 bits (116), Expect = 1e-16 Identities = 146/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 1455865 TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGAT 1455924 ||| || |||||||| | |||||| || | |||||||| ||| |||||| |||| Sbjct 278 TGACCGCCGACGAGCAGTACTTCATCTCTCATATTCTCGCCTTCTTT-GCCGCCTCCGAT 220 Query 1455925 GGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCA 1455984 || ||||| ||||||||||| | || || | ||||| ||| | || ||||| Sbjct 219 GGTATCGTCAACGAGAACCTGGTTGAACGTTTCAGCGCGGAGGTTCAAATTCCTGAGGCT 160 Query 1455985 CGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTC 1456044 || | ||||| || ||||||||| || || || || || |||||||| ||||| || Sbjct 159 CGCTGCTTTTATGGCTTCCAGATCATGATGGAGAATATTCATTCTGAAACATACTCTCTT 100 Query 1456045 CTGATCGACACCTACGTCAAGGA 1456067 || || || ||||| ||||||| Sbjct 99 CTCATTGATACCTATATCAAGGA 77 >seq44974 Length=881 Score = 91.5 bits (100), Expect = 2e-12 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1456544 ATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACC 1456603 |||||| ||||||| | | ||| | |||| || ||| |||| |||||||||| | Sbjct 492 ATCGAGCAAGAGTTCTTGACAGAGGCATTGCCATGCGCTCTCCTCGGTATGAACGCCA-C 434 Query 1456604 GCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCG 1456663 | | ||| |||||||||||| || |||||||| ||||| || | || || || | Sbjct 433 GTTGATGAAGCAGTACATTGAA-TTCGTCGCCGATCGCCTCCTGGTTGCACT-GGGTAAC 376 Query 1456664 GAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGC 1456723 |||||| ||| ||| |||||||| || | |||||| || || || | ||| Sbjct 375 GAGAAGGTGTACAAGACTGCCAACCCCTTTGATTTCATGGAGAACATTTCCCTAGGCGGC 316 Query 1456724 AAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780 ||||| ||||| || ||| || || |||||||| ||||| || |||| |||| Sbjct 315 AAGACGAACTTCTTTGAGAAGCGAGTCGGCGAGTATCAAAAGGCTGGTGTCATGGCCA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7165243525508600