Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq70435 217 5e-52 seq24152 111 6e-20 seq42261 93.3 2e-14 >seq70435 Length=537 Score = 217 bits (240), Expect = 5e-52 Identities = 298/412 (72%), Gaps = 6/412 (1%) Strand=Plus/Minus Query 44505 GCCTTCGAGGCGCTCCAAGACTTCGCGAAGAACACTCCCTACGGCCTTGCCCAGGCCACC 44564 || |||| ||||| || || | |||| ||| || || ||| |||| | |||||| Sbjct 501 GCTTTCGCTGCGCTGCAGGAAT-CGCGGCGAAAACGCCGTACAGCCTGGAGCAGGCCGTT 443 Query 44565 GAAGGCTTCACCAAGCTCGTGAACCTGGGCCTTGAGCCCAGCGAACGGGCGCTCATGTCG 44624 |||||||||| |||||| |||||||| ||||| ||| ||| ||| || | || Sbjct 442 GAAGGCTTCAGCAAGCTGGTGAACCTCGGCCTGACGCCATCCGAGAAGGCTCTGACCTCC 383 Query 44625 TACGGCAACACCGCCGCCGCCATGGGCAAGGACATGTCCCAGATGATCGAAGCCGTGGCC 44684 ||||||||||||||||| || ||||| || ||| | ||||||||||| |||||| || Sbjct 382 TACGGCAACACCGCCGCAGC-ATGGGGAAAGACCTCAATCAGATGATCGAGGCCGTGTCC 324 Query 44685 GACGCGACCACGGGTGAGTTCGAACGTCTGAAGGAGTTCGGTATCAAGGCCAGCTCCGAG 44744 || || |||| || |||||||| || |||||||| ||||| |||| | | ||| || Sbjct 323 GATGCTGCCACCGGCGAGTTCGAGCGCCTGAAGGAATTCGGCATCACGTCGAGCCAGCAG 264 Query 44745 GGTGAC--CGTGTCAAGTTCACGTTCCGGGGTGTCACGACCGAGATCGGCAAGAACGCCG 44802 || ||| ||||| | || ||||| || ||||| || ||||| |||| |||| Sbjct 263 GGCGACAAGGTGTC--CCTGACCTTCCGTGGCGTCACCACGACCATCGGGAAGAGCGCCA 206 Query 44803 CCGAGATCGAGCAGTACCTCATGGCCCTGGGCGAGAACGAGTTCGCCGGAGCCATGGAGA 44862 ||||| ||| ||||||||| ||||||| | ||| |||||||| |||||||| Sbjct 205 AGGAGATTGAGGGCTACCTCATGAACCTGGGCCTGGTCGATTTCGCCGGCGCCATGGATC 146 Query 44863 ACCGTATGAACTCCCTGGACGGTGCCATCGCTGGCCTGGGCGACTCCTGGGA 44914 | || || | |||||||| |||||| || ||||||||| | ||||| Sbjct 145 AGCGCGCAAAGACACTGGACGGAGCCATCTCTAACCTGGGCGATACTTGGGA 94 >seq24152 Length=392 Score = 111 bits (122), Expect = 6e-20 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCACGGAC-TGCGCCTGCTG 36771 ||||||| || |||||||| ||||||| ||||||||| ||| || | ||| |||| Sbjct 164 TCGGCCC-GCCGGCACCGGCAAGACCTACCTGGCCATGG-CCAAGGCCGTGCAGGCGCTG 221 Query 36772 GAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAG 36831 || ||||| | || | || || || |||| |||||||| |||||||||| ||| | Sbjct 222 CAGACCAAGAACGTCAACCGGATCATCCTCACCCGCCCCGCGGTCGAGGCCGGCGAGCGG 281 Query 36832 CTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTG 36891 || ||||||||||||||| || |||||||| | || |||||| ||| || Sbjct 282 CTGGGCTACCTGCCCGGCACGCTCAGCGAGAAGATCGACCCCTACCTGCGGCCGCTGTAC 341 Query 36892 GACGCGGTGATCGACCTGGTTGGCCCG 36918 |||||| || |||| |||| | |||| Sbjct 342 GACGCGCTGCACGACATGGTCGACCCG 368 >seq42261 Length=2804 Score = 93.3 bits (102), Expect = 2e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 4194 CCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAGAACGTGGACGGGCTTGTGC 4253 ||||||| ||||||||||| || || ||| ||||| ||| | || ||||| || Sbjct 2476 CCGGCACCGGCAAGACCACGCTCGCGCGCGT-ATCGCCGAGGATGTCGACGGCACGGTCG 2534 Query 4254 TGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAAGACCAAGGGCTGCCCGAACA 4313 |||||| |||| || ||||||||||||| ||| || ||||||||||||| || Sbjct 2535 TGTTCGGCGCCTTCACAGGCAAGGCCGCCTCGGTCATGCGCGCCAAGGGCTGCCCTGACG 2594 Query 4314 CCAGCACGATCCACCAGCTGATCTAC 4339 | |||||||||| |||||||||| Sbjct 2595 CATCCACGATCCACGCGCTGATCTAC 2620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180517050851400