Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026611.1 Length=43129 Score E Sequences producing significant alignments: (Bits) Value seq44328 214 5e-51 seq56734 178 4e-40 seq39396 161 3e-35 >seq44328 Length=3229 Score = 214 bits (236), Expect = 5e-51 Identities = 536/811 (66%), Gaps = 10/811 (1%) Strand=Plus/Minus Query 22655 TTTTGTATGAACAAACACCCACCGCGAGTGCTTCCCTATCTGATCGCGAAGAACTCGACA 22714 ||| || ||||| || ||||| || || || || |||||||| || || || || || Sbjct 3220 TTTGGTGTGAACGAA-ACCCATCGTGAATGATTTCCTATCTGCTCCTTCAGCACCCGGCA 3162 Query 22715 CGCTGTGTCATTGAGTGCGACGCCAATCGCCTTACCTCCCTTTGCGTTTTCCGGGTTTAT 22774 || || ||||| || || |||||||| ||||| || | || ||||| ||||| ||||| Sbjct 3161 TGCGGTATCATTCAGCGCCACGCCAATAGCCTTGCCCGCTTTGGCGTTCTCCGGATTTAT 3102 Query 22775 CCACGCAACCTTCCTCTGCATGTCTACCTGGCACCACTCTAGATCCAGAATGTTAGAGCG 22834 ||| || |||||||| ||||| || ||||| ||| || |||||||||||||| || || Sbjct 3101 CCATGCCACCTTCCTTTGCATATCAACCTGCGTCCATTCCAGATCCAGAATGTTTGAACG 3042 Query 22835 CCTTAATCCAGTAGCTAGGGCAAAAATAACGACAGGCTTTATCGAGTCAGGCATGTAATC 22894 | ||| || || | || ||||||| || || || | || ||| |||||| | || Sbjct 3041 GCGTAACCCGGTGGAGAGAGCAAAAACCACAACCGGTCTGATGCTGTCTGGCATGCATTC 2982 Query 22895 AATCAGCCTAGACGCCTCTTCTTTTGTCAGCCATCGTATGCGCTTATTGGCCGGTGGCTT 22954 || ||||| || || ||| | |||||||| || || | || | | || ||| Sbjct 2981 GATGAGCCTGTTTGCTTCCTCTCTGGTCAGCCAGCGAATCCTTTTGCTTACGGGCTTCTT 2922 Query 22955 CGTCTTCAGGCTTGGAGCGACATGCATCCAGTGCCATTCATTCACGGCGATCCTGAATAG 23014 ||||| | | || || | ||||| |||||| || | ||| | || || Sbjct 2921 GGTCTTGATGACCGGCGCTGTCTTTATCCATCCCCATTCGTTAGCCGCGGCACGGAGAAG 2862 Query 23015 GGATCGGATAAAGGCGATGTACTTGTTTTTTGTACCCTGACTTACTGGAGAGGGCTTGAA 23074 ||||| ||||| | | ||| | | || | || || ||| ||||| | ||| | Sbjct 2861 TGATCGCATAAAAGAAAGGTAATGGCTTCTGGTTCCTGCACTGACTGGCCGGTCTTTGTA 2802 Query 23075 CTTTGGCTCGGGCTTTCCATTCCTTTTCGCTGCCTCGACCTTGCTTTCCCAGATCTGATA 23134 | ||| ||| ||| | | |||| | || || ||| || | ||||| || | Sbjct 2801 TTCAGGCACGGTCTTGCTGTCCCTTATGGCCGCATCGCGCTGAATCTCCCATTTCCGGCG 2742 Query 23135 AAGCTTAGTATTTGTCAATTTCCCGATCGCCTCGTATACCTCATCCTGCGTGATGGACGA 23194 | || || ||| | || | || | ||||| || || || || || Sbjct 2741 GTGGTTGCGGTTGATCATCCTGCCAACAATCTTCTGCACCTCCTCGCCGGTAATAGAGGA 2682 Query 23195 GATATCCCTGCCGGAAAAGTGTTGCAGGAAAAACTCTATCTTGGTCTTGTCATCGTCGAT 23254 |||||||| || || || || || || ||||||||||| |||||| || || | Sbjct 2681 AATATCCCTTCCTGAGAAATGACCAAGAAAGAACTCTATCTTTACCTTGTCGTCATCCAG 2622 Query 23255 CGATCGCTTGTACTCCTTCTCTCGAAGCCACCTGATACAACACTCTTCGAAAGTTCTTGC 23314 |||||||| ||| ||||| ||||| | || || ||||||||||| || | Sbjct 2621 GCTTCGCTTGTGCTCTTTCTCATCCAGCCATCGCATGCAGGCCTCTTCGAAAGACCTGAC 2562 Query 23315 GGGC--TTCTCCTTGAGCTTGTCCACCCGCCA-----CGCCTCCGACTTTAATCTGTCGT 23367 ||| || ||| | || || |||||||| |||||||| ||| || | ||||| Sbjct 2561 AGGCAGGTCGCCT--AACTCCTCAACCCGCCACGCTTCGCCTCCGCCTTCAACCGGTCGT 2504 Query 23368 ATAGCTCCTGCGCTTGTTTCTTGTCCCTCGTTCCAAGAGAGCGCCTAACTCTCTTTCCTG 23427 |||||||||||||| || |||||| || || || ||||||||||| || || Sbjct 2503 GCAGCTCCTGCGCTTGCTTTTTGTCCGCTGTGAACAGCGATCGCCTAACTCTTTTGCCAT 2444 Query 23428 ATGGCGTAGCGAAATCACAGTGCCACACGCC 23458 || ||| ||||| | ||||||| || || Sbjct 2443 TCGGGGTAAAGAAATGAAAGTGCCATACCCC 2413 >seq56734 Length=385 Score = 178 bits (196), Expect = 4e-40 Identities = 249/348 (72%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 22298 CCATTACTTTTCAATGGTTTACGCAATTCTCGTCAATCCGTC---ATTTCCTCCTTGTGT 22354 ||| || |||||||| ||| |||| | ||||||| | ||||||||||||||| Sbjct 365 CCAATATATTTCAATGAGTTAAGCAAG---CTTCAATCCTACCTGATTTCCTCCTTGTGT 309 Query 22355 CGTTTTTGTGTCGCAGTCATCGAAAAGCAGGTCAATTTTCTTGGCATGCTCAGTGAGATG 22414 ||| ||||||||| |||| | ||||| |||||| || ||||| || || || || Sbjct 308 CGTATTTGTGTCGTTGTCACCCAAAAGAGAGTCAATCTTGCGCGCATGTTCGGTCAGGTG 249 Query 22415 GTTGGGGGCTAGGTGCGCGTATCTCCTGACCATCTCTATGCACTCCCAGCCTCCCATTTC 22474 ||| || || ||||| || || || | ||||| || |||| ||||| ||||||||||| Sbjct 248 GTTAGGTGCCAGGTGTGCATACCTGCGTACCATTTCGATGCTTTCCCATCCTCCCATTTC 189 Query 22475 TTGGAGCGCTGAAAGCGGTACTCCAGCTTGGATTAGCCAACTCGCCCACGTGTGCCGGAG 22534 || | || ||||| || || || || || || ||||| || ||||| || || || | Sbjct 188 CTGCAATGCCGAAAGTGGAACGCCTGCCTGAATCAGCCAGCTTGCCCAGGTATGACGTAA 129 Query 22535 ATCGTGAAATCTGAAATCCTCTATCCCGGCCCTCTTTAGTCCAATATTCCACGCTGTATT 22594 || ||||| | ||||||||| || || |||| ||| ||||| || |||||| || || Sbjct 128 GTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTTGAGTCCTATCCGCCACGCCGTGTT 69 Query 22595 GTCGTCAACCCTCATCTTTCGCACTGCGGGTGTTTTTGTCCCATCTGG 22642 || ||| | ||| || | || | || || || || || ||||| Sbjct 68 ATCATCACAGCGCATTTTCCTGACAGATGGCGTCTTGGTGCCGTCTGG 21 >seq39396 Length=387 Score = 161 bits (178), Expect = 3e-35 Identities = 223/307 (73%), Gaps = 9/307 (3%) Strand=Plus/Plus Query 22298 CCATTACTTTTCAATGGTTTACGCAATTCTCGTCAATCCGTC---ATTTCCTCCTTGTGT 22354 ||| || |||||||| ||| |||| | ||||||| | ||||||||||||||| Sbjct 76 CCAATATATTTCAATGAGTTAAGCAAG---CTTCAATCCTACCTGATTTCCTCCTTGTGT 132 Query 22355 CGTTTTTGTGTCGCAGTCATCGAAAAGCAGGTCAATTTTCTTGGCATGCTCAGTGAGATG 22414 ||| ||||||||| || | ||||| ||||||||| || ||||||| || || Sbjct 133 CGTATTTGTGTCGTTATCGCCTAAAAGTGCGTCAATTTTGCGTACAAGCTCAGTCAGGTG 192 Query 22415 GTTGGGGGCTAGGTGCGCGTATCTCCTGACCATCTCTATGCACTCCCAGCCTCCCATTTC 22474 ||| || || ||||| || || || | ||||| ||||||| ||||| || |||| ||| Sbjct 193 GTTAGGTGCCAGGTGTGCATACCTGCGTACCAT-TCTATGC-TTCCCATCCGCCCA-TTC 249 Query 22475 TTGGAGCGCTGAAAGCGGTACTCCAGCTTGGATTAGCCAACTCGCCCACGTGTGCCGGAG 22534 || | || ||||| || || || || || || ||||| || ||||| || ||||| | Sbjct 250 CTGTAATGCAGAAAGTGGAACACCTGCCTGAATAAGCCAGCTTGCCCAGGTATGCCGTAA 309 Query 22535 ATCGTGAAATCTGAAATCCTCTATCCCGGCCCTCTTTAGTCCAATATTCCACGCTGTATT 22594 || ||||| | ||||||||| || || |||| ||| ||||| || |||||| || || Sbjct 310 GTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTTGAGTCCTATCCGCCACGCCGTGTT 369 Query 22595 GTCGTCA 22601 || ||| Sbjct 370 ATCATCA 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137677839222600