Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq29103 104 2e-17 seq28556 102 8e-17 seq2641 98.7 1e-15 >seq29103 Length=1863 Score = 104 bits (114), Expect = 2e-17 Identities = 167/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTA-GCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||| |||| ||| || | || | ||| | |||| || |||||||||||||||||||| Sbjct 1060 TTCCACCTCGGAGACGAAGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCT 1119 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| ||| | ||| || ||||| || || || || |||| |||||||| || || Sbjct 1120 GCAAGAGTGCGGCCGTCCTCAAGCTGCTT-CCGGC-AAGATCAGGCGCTGCTGGTCCGGG 1177 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || ||||| ||| | |||||||| || || Sbjct 1178 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCG 1237 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 || || || || ||||| || || || | || || |||||| || || | |||| Sbjct 1238 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAACTTGGCGCTGTGTT 1293 >seq28556 Length=388 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || | ||| || || || ||||||||||||||||| || | ||| | Sbjct 65 AGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTACGG 124 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || || | ||||||||| || || || ||||||||| Sbjct 125 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCT 184 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | || || || || || || || || || Sbjct 185 TTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGCGTG 244 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| | || || ||||| ||||||||| Sbjct 245 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 283 >seq2641 Length=263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||||| | || || || || || ||||| || ||||||||||| ||| Sbjct 248 TTCCACCACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGG 189 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || || || | ||| || || ||||| || | || || |||||||| | Sbjct 188 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGG 129 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || |||||||||| | |||||| ||| | || || || ||||| | Sbjct 128 GAATACCCTCCTTGTCTTGAATTTGGT-TTTGACATTGTCGATAGTATCCGAAGATTCAA 70 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 | || || || || || || ||||| ||| Sbjct 69 CTTCAAGGGTGATAGTCTTGCCGGTCAAA 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504575232356000