Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq27421 168 1e-36 seq50444 156 6e-33 >seq27421 Length=7303 Score = 168 bits (186), Expect = 1e-36 Identities = 496/760 (65%), Gaps = 41/760 (5%) Strand=Plus/Plus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 |||||||| | ||| | ||||| |||||||| || || ||||| ||| |||| || || Sbjct 1145 GCTTTAATAACGGGTGTGACTGGACAGGATGGTTCTTACCTTGCAGAATTTCTGCTTGAG 1204 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || || |||||||| |||||||| | ||| | | || ||||| ||| | ||| Sbjct 1205 AAAGGCTATGAAGTACATGGTATAAAACGTCGTTCATCACAATTTAACACACAGCGTATC 1264 Query 161084 GATCATATCTTC---GATCAG------------------TTACACCTCCACTACGGGGAT 161122 || ||| | | | |||| | || | | || || || ||| Sbjct 1265 GACCATTTATACCAGGATCCGCATGAAAAAAATGTTAACTTTAAATTACATTATGGTGAT 1324 Query 161123 TTGACTGACTCCCTGAACATAGTCTC-TATCATTAAGGAAGTAGAACCTGATGAGATCTA 161181 ||||| ||| || ||| | | ||| |||| || ||||| |||| ||||| | || Sbjct 1325 TTGACCGACACCTCAAACCT-GACTCGTATCCTTTCAGAAGTCCAACCAGATGAAGTGTA 1383 Query 161182 CAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACA 161241 ||| | || |||||| || || |||| ||| |||| ||||||||||| ||| | Sbjct 1384 TAACTTGGGTGCACAGTCACACGTTGCAGTAAGTTTTGAGGCTCCTGAATATACTGCAGA 1443 Query 161242 GACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGACAGA 161301 ||||||| | || || || | |||| || || | || |||| || |||| | Sbjct 1444 TGTTGATGCTATTGGCACTCTTCGTTTATTAGAAGCTATCCGATTCCTTGGATTGACTAA 1503 Query 161302 TAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACC 161361 | | | || ||||| || || ||| | ||||| ||||| || || | || Sbjct 1504 AAAAACCAAATTTTATCAGGCTTCAACGTCTGAACTTTATGGTTTGGTTCAGGAAATTCC 1563 Query 161362 ACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGG 161421 ||| |||||||| || || || |||||||| ||| |||| ||||| ||| | |||| Sbjct 1564 ACAAAAAGAAACTACGCCATTTTACCCACGTAGTCCTTATGCTGTAGCAAAAATGTATGC 1623 Query 161422 ATATTGGATT---GTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTAT 161478 ||| |||||| ||||| ||| | || |||||| ||| | || ||| ||| || Sbjct 1624 ATACTGGATTACTGTAAA---CTATCGTGAAGCTTATGGTATGTATGCGTGTAATGGGAT 1680 Query 161479 TCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAG 161538 ||||||||||||| || || || || || || || || ||||| || || ||||| | Sbjct 1681 CTTATTCAACCATGAATCTCCGCGTCGTGGCGAAACATTTGTAACGCGCAAAATTACACG 1740 Query 161539 GGGACTATCCCGTATTAGTACAGGACT----ACAGGATTGTCTATACCTAGGTAATCTAA 161594 || | | |||| ||| || |||| | |||||| | || || | Sbjct 1741 TGGCATGGCGAATATTGCCCAAGGCCTTGAAACAGCA--ATCTATA--TGGGCAACATGG 1796 Query 161595 ACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGT--GGAGGCTATGTGGTTGATGTT 161652 | || ||||||||||| || ||| |||| ||||| | || | ||| ||||| | Sbjct 1797 ATGCACTGCGAGATTGGGGACACGCTAAAGATTATGTCAAAATGCAA--TGGATGATGCT 1854 Query 161653 ACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGT 161692 ||||| || || || |||| ||||||||| || ||| Sbjct 1855 GCAACAAGAGCAGCCAGAAGACTTTGTGATTGCGACGGGT 1894 >seq50444 Length=3642 Score = 156 bits (172), Expect = 6e-33 Identities = 492/755 (65%), Gaps = 33/755 (4%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 |||||||| | || | ||||| |||||||| || ||||| ||||| ||||||| || Sbjct 1341 GCTTTAATAACGGGCGTGACTGGACAGGATGGTTCATATCTGGCTGAGTTTCTACTTGAG 1282 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || || || ||||| ||||| || | ||| | | || ||||||||| | | || Sbjct 1281 AAAGGCTACGAAGTTCATGGAATCAAACGTCGTTCATCACAATTTAATACACAACGTATT 1222 Query 161084 GATCATATCTTC---GATCA-------------GTTAC-----ACCTCCACTACGGGGAT 161122 || || | | | |||| |||| | | || ||||| ||| Sbjct 1221 GACCACCTGTACCAGGATCCACACGAAAAAAATGTTAATTTCAAGTTACATTACGGTGAT 1162 Query 161123 TTGACTGACTCCCTGAACATAGTCTC-TATCATTAAGGAAGTAGAACCTGATGAGATCTA 161181 ||||| || | ||| | | | | |||| || |||||| ||||||| ||| |||| Sbjct 1161 TTGACCGATACTTCGAATTT-GACACGTATCCTTTCTGAAGTACAACCTGACGAGGTCTA 1103 Query 161182 CAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACA 161241 ||| |||| || || ||| || ||| |||||| || ||||| |||||| | Sbjct 1102 TAACTTAGGCGCGCAATCTCACGTAGCGGTAAGTTTCGAATCGCCAGAATACACAGCAGA 1043 Query 161242 GACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGAC-AG 161300 |||||| | || || || | | || || || | | | || ||| | || | Sbjct 1042 TGTTGATGCCATCGGTACTCTGCGTCTGTTAGAAGCGATCAGATTTCTGGGTTTAACTAA 983 Query 161301 ATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACAC 161360 | | | | | || || ||||| ||| ||| | ||||| |||| ||||||| || Sbjct 982 AAAAACTAAATTT-TATCAAGCATCAACCTCTGAACTTTATGGTCTGGTGCAAGAGATAC 924 Query 161361 CACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATG 161420 | || |||||||| ||||| ||||||||||| || |||| || |||||| | |||| Sbjct 923 CCCAAAAAGAAACGACACCATTCTACCCACGCAGCCCTTATGCTGTGGCTAAAATGTATG 864 Query 161421 GATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTC 161480 ||| |||||| ||||| | || ||| || ||| | ||| ||| || ||| Sbjct 863 CATACTGGATTACCGTCAACTATCGCGAATCTTACGGAATGTATGCCTGTAACGGGATTT 804 Query 161481 TATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGG 161540 | || || || || || ||||| || || || ||||||||||| ||||| || || | | Sbjct 803 TGTTTAATCACGAATCTCCACGCCGTGGCGAAACTTTCGTAACACGTAAAATCACACGTG 744 Query 161541 GACTATCCCG--TATTAGTACAGGACT--ACAGGATTGTCTATACCTAGGTAATCTAAAC 161596 | ||| || |||| | |||||| | | | |||||| | || || | | Sbjct 743 G--TATGGCGAATATTGCTCAAGGACTTGAAACTACGCTCTATA--TGGGCAACATGGAT 688 Query 161597 TCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAA 161656 || || |||||||| ||||| |||| ||||| | |||| ||||| | || Sbjct 687 GCACTCCGCGATTGGGGCCATGCAAAAGATTATGTAAAAATGCAGTGGATGATGCTGCAG 628 Query 161657 CAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 |||||||| ||||| |||| ||| ||||| || || Sbjct 627 CAGGAAACGCCTGAGGACTTTGTTATTGCAACGGG 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728740727164000