Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq7403 87.8 2e-12 seq6540 82.4 8e-11 >seq7403 Length=2901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 16/153 (10%) Strand=Plus/Plus Query 13230 TCCTCTATAGCTCAGTTGGTAGAGCAGGTGACTGTTAATCACCCTGTCCCTGGTTCGAGT 13289 ||| | |||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 927 TCCGCGATAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGAGT 986 Query 13290 CCAGGTGGAGGAG------------TCGGGCGAATAACTCAG--CGGTAGAGTGCCTCCT 13335 |||||| | |||| ||||| | ||| | ||| |||||| | |||| || Sbjct 987 CCAGGTCGCGGAGCCACTTCCATTCTCGGG-GTATAGCGCAGCCCGGTAGCGCGCCTGCT 1045 Query 13336 TTACACGGAGATTGTCGGGGGTTCG-ATCCCCT 13367 || | || ||||||| ||||| ||||||| Sbjct 1046 TTGGGAGCAGGATGTCGGGAGTTCGAATCCCCT 1078 >seq6540 Length=5298 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 13230 TCCTCTATAGCTCAGTTGGTAGAGCAGGTGACTGTTAATCACCCTGTCCCTGGTTCGAGT 13289 ||| | |||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 671 TCCGCGATAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGAGT 730 Query 13290 CCAGGTGGAGGAG 13302 |||||| | |||| Sbjct 731 CCAGGTCGCGGAG 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551573758624000