Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8712 129 8e-25 seq95708 91.5 2e-13 >seq8712 Length=1748 Score = 129 bits (142), Expect = 8e-25 Identities = 475/738 (64%), Gaps = 12/738 (2%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||| | |||| |||||||| || || | ||| |||| ||||| ||||| || || Sbjct 79 GTAGAGAGCC--TCGAATTCCTCACCGTAGCAGTCAGCCAAGCCAGGGCATTCGTTGGGG 136 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 ||||| | | ||| | | | | | ||| || ||||| || | |||||||||||| Sbjct 137 CACATGAGAGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAACAAATCGGGAATCCAT 196 Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCG 69684 ||||| | ||||| || | || | | ||| || || || || ||| || ||| Sbjct 197 AGAGCAAGGAAGAGGTCACGGGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCG 256 Query 69685 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGT 69744 || ||||| | | || | ||||| || || || || || | || | || ||||| Sbjct 257 AGGAACTCAAACACGTCTGCGTGCCACGGCTCCAGGTAAATGGGCAAAGCACCAGGTCGC 316 Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 || || || ||||| || | ||||||||| ||||| || | || | ||||| |||| Sbjct 317 TTGTTGCCACCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACGCGAAGCATGGGAACG 376 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 | || || || | || || || || | ||| || || | || ||||| Sbjct 377 ACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGG 436 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 | || || || || || ||||| || ||||| | || | |||| | | |||||| Sbjct 437 ACGTTCAGGCCGATGCCGCCAGCCATCTTGGAGATCATGGCGC-ACGTCTGAGGGTGTCA 495 Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 69984 || || || || ||||| ||||| ||| || | ||| || ||| |||| || Sbjct 496 TAGATGCCTTCGATGCTGTCATCCTTCA-GTCGACAAGGAAGCAGGATGACAGCTGGCAT 554 Query 69985 TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGC 70044 ||| || || || || |||| ||| || || ||||| ||||| |||| || | Sbjct 555 TGTGGCGTACCAGCGTTGAATAGTGTGGGCGAGGCGTGGGTGAAGAATTTGCTCGACATG 614 Query 70045 AGATTGTATGTTTCAATAGCTGATTCTA---TATC-CCACTGATGAATTCCTATCGCGAC 70100 || ||||| ||||| | | || | | || || | | || || | || || Sbjct 615 AGGTTGTAGGTTTCCAGGACACGCTCCAGGTTGTCTCCCCAG----ATACCGACGGCAAC 670 Query 70101 ACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGA 70160 |||||| | ||| ||||| ||||| || || | || || | || | || || || Sbjct 671 ACGCATAATCATGTGCTGTGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGGAGATAGGA 730 Query 70161 TTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAAC 70220 | |||||||| || || ||||| || | ||| |||||||| ||||| | ||| | Sbjct 731 TCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCTGTCGTAGACAATGGC 790 Query 70221 AGAATTTAGTTTATCCTT 70238 ||| | |||| ||||| Sbjct 791 AGAGTCGAGTTCCTCCTT 808 >seq95708 Length=954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/293 (67%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||| | ||| ||||| || || || || | || || ||||||||||| ||| Sbjct 56 TCTTTGATATAGGTATCAATCAAGAGGGAGTAAGTCTCCGAGTGGATGTTTTCCATCATG 115 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 ||||| ||||||||||| || | ||||| | | ||| |||||| | || | || Sbjct 116 ATCTGGAATCCGTAAAAGCAACGAGCTTCTGGCACTTGGACCTCTCCGCTGAAACGCTCA 175 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 |||| || || || || || || ||| || || || ||||| | | || || Sbjct 176 ACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCGAAGAATGCGAGGATGTGGGAGATG 235 Query 40058 AAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGATATCTTTTGATATATCT 40114 || ||||| || ||| ||| || ||||| || | | |||||| || | ||| Sbjct 236 AAGTATTTCTCGTCGTCGTTCAGACGGTTGTTCCAATCGTGCAGATCTTTGGAGAGATCA 295 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 | ||||| || ||||| || || ||||| ||||| |||||||| | ||| || Sbjct 296 ATCTCTTCGGC-GTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685789997292000