Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq74251 165 2e-36 seq60360 138 3e-28 seq53231 100 7e-17 seq1029 80.6 6e-11 >seq74251 Length=708 Score = 165 bits (182), Expect = 2e-36 Identities = 326/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Minus Query 3004 CATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTGCTGCCGA 3061 || ||| ||||||| |||| || ||| || ||| ||| || || ||| | || Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 3062 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCAC 3120 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 3121 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCCG 3180 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 3181 GGCTGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTACGTGACGCC 3240 || || |||| ||||||||||||| | | ||| | || | ||| ||||||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGCC 449 Query 3241 TGCACCAAGGGCG-GCATCCCGGCCATTTTCTACGTGGACAACGGCTCGGGCTACGTCAA 3299 | || || |||| || | |||||||||||||| || ||||||| || ||| Sbjct 448 ATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3300 CCACATGATGCGCGACGAGGCGGTCGGCCTCATGGGCCGCCTGGGCATCGA-TATGAAGA 3358 ||| ||||||| ||||| ||| |||||||||| ||| |||| | Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3359 ACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCTG 3417 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCATT 287 Query 3418 TGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3467 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 286 TGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq60360 Length=752 Score = 138 bits (152), Expect = 3e-28 Identities = 223/313 (71%), Gaps = 11/313 (4%) Strand=Plus/Plus Query 25570 GCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAG---CTGGCCGACGAA 25626 || ||||||||||| || ||||| |||||||||||||| |||| ||||||||||| Sbjct 53 GCCACCGGCAAGGCCGTCTCGGAGACGGTCGCCGAGTT---CAAGCGCCTGGCCGACGAG 109 Query 25627 CCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCCTCGGTTTA 25685 ||| ||| ||||| || || || |||||| | || ||||||| |||||| |||| || Sbjct 110 CCGACCAAGGCCTCGGCCGC-GCTGAACGAGCAGTACAACTACCTCACCGCCGCGGTCTA 168 Query 25686 CGAGCAGATAGCCGCCCTCGATCAGCAAGGCGATTCGCTGGGTGCCGCCCAACTGGCCAT 25745 ||| ||||| || || || |||| ||| | | | |||||| | |||||| Sbjct 169 CGACCAGATCCGGGCGCTGGAGGAGCAGGGCAACAAGACCGCCGCCGCCAACCTGGCCGA 228 Query 25746 GGACGCCTATAGCCAG-GCAATGGACGAGCGGGCGAGCCAGATCGTCGAGAACCTGGGCA 25804 || ||||| ||| | || || | ||||| || | | ||| |||||||| || | Sbjct 229 GGCGACCTAT-GCCGGCGCCTTGCAGGAGCGCGCCAAGAACATCAAGGAGAACCTCGGAA 287 Query 25805 CCCTGGAAACCGCTTGGAAGACCGTTGCCGGGGTGGCCAAGGGCGCCTGGGACGAAATGC 25864 || | || | || ||||||| ||| || | | |||||||| |||||||||| |||| Sbjct 288 CCATTGAGTCTGCCTGGAAGAGCGTCACCAGCGGCGCCAAGGG-GCCTGGGACGCGATGC 346 Query 25865 TCGGCGTGGGCCG 25877 || | | ||||| Sbjct 347 TCAACATCGGCCG 359 >seq53231 Length=1021 Score = 100 bits (110), Expect = 7e-17 Identities = 169/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 21087 CACTGCTGAGCT-GGTAGTGGACGGGCGGATCGAGTCCGACACCGCCTGGTTCCTGCTGG 21145 |||||| ||||| ||| || || ||| | || |||||||||||||||||||| | Sbjct 1 CACTGCCGAGCTTGGTGGTCGAGTCGCGCCTGACCTCGGACACCGCCTGGTTCCTGCTCG 60 Query 21146 ACACCACCAAGCCGGTAAAACCGTTCATCTACCAGCCCAGGAAGAAGCCGGTATTCGTTT 21205 |||||| |||||| || || |||||||| || | ||| ||||| |||| Sbjct 61 ACACCAGCAAGCCAGTGCGGCCCTTCATCTATCAAGAGCGCAAGGCACCGGT-CTCGTCC 119 Query 21206 CCCAGGTCAACCTGGATTCGGATGACGTCTTCAGCCTGCGCAAG---CTGAAGTTCGGCG 21262 || || ||| || |||| ||||| |||| | |||||| |||||||| | Sbjct 120 AGCAAATCGACCCCGAGGCGGACGACGTTTTCAAC---CGCAAGGAATACAAGTTCGGTG 176 Query 21263 CCGAGGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAACTGGCCTATGGCTCCACCGGCA 21322 | || || || || || | || || ||||||||||| ||||||||||||| ||||| | Sbjct 177 CGGAAGCGCGGGCAGCGGGGGGCTATGGCTTCTGGCAGATGGCCTATGGCTCGACCGGTA 236 Query 21323 C 21323 | Sbjct 237 C 237 >seq1029 Length=3852 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 8875 GACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCCGGTGGCTTCGCC 8934 || ||||||||| | || || || || || || | ||||||||| ||||| |||||| Sbjct 3762 GAGATGTACCAGAGGACCGCCGAGGCCCTGGACCGGATCTGCGCCGCCGGCAGCTTCGAA 3703 Query 8935 GAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGA---AATTGCTGAGCGT 8991 ||| |||||||| | | ||| |||| | ||| |||||| ||| || ||||| Sbjct 3702 CAGCGGGCCGAGGTGTTGACCCTGCTGATCCACTC---TGCCGATCAAATCGCCCAGCGT 3646 Query 8992 GACGCGTCACGTTTTG-CCGAATTGATC 9018 ||| ||||||||||| ||||| || || Sbjct 3645 GACATGTCACGTTTTGCCCGAAATGGTC 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117501107313600