Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027330.1 Length=45403 Score E Sequences producing significant alignments: (Bits) Value seq60183 360 6e-95 seq93791 176 1e-39 seq103945 170 6e-38 seq90964 102 2e-17 >seq60183 Length=833 Score = 360 bits (398), Expect = 6e-95 Identities = 563/794 (71%), Gaps = 10/794 (1%) Strand=Plus/Minus Query 3539 CAATCAGCTGGCAACCCACAGGACTTTGTAAGCTATATCCCTTGTGCAATGGATGGTTCT 3598 |||||| |||||| ||| | || ||||| ||||| || ||||| || |||||||| || Sbjct 833 CAATCAAATGGCAAGCCAGAAGATTTTGTGAGCTACATACCTTGCGCTATGGATGGCTCA 774 Query 3599 TGCTCTGGCATC-CAGCACTACTCTGCAATGCTGCGCGATACTGTTGGCGGTACTGCTGT 3657 ||||| || || ||||| ||||| || ||||||||||| |||| || ||| | || || Sbjct 773 TGCTCGGGAATTTCAGCATTACTCAGCGATGCTGCGCGACTCTGTAGGAGGTGCAGCAGT 714 Query 3658 TAACTTGGTTAACT--CTGACAAGCCTAATGACATCTACGGAGAGGTCTGCAAGGTGACT 3715 |||| | ||| |||| || | ||||| ||||||| || |||||| || | Sbjct 713 TAACCTAACTAAAGGACTGAAGGCCCGCAGGACATTTACGGAGCTGTTTGCAAGCTGG-T 655 Query 3716 ATTAAAGAG-CTGCAAGCAATTGCTGACGGCTCACAGGTATATGACAGCAAGATTGACCC 3774 | | || | ||||| | || ||| |||||| || | |||| | | |||||||| | Sbjct 654 AGTCCAGCGACTGCATGACATCATTGATGGCTCAGAGATTTATGCCGGAAAGATTGAAGC 595 Query 3775 TGTATTAGCTCAGCAGCTGGCGCAGGAGTGGCTACGTCTGCAACCAAATCGCAGCCTGAC 3834 | |||| | | || || ||||| || |||||||| ||| | | |||| Sbjct 594 TAATAAAGCTAAAGAATATGCAACCGAATGGCTGCGACTGCAACCTAATAGAAATTTGAC 535 Query 3835 CAAGAAACCTGTTATGACCCTGCCTTACGGCAGCACTCAGTTAACCTGCCGTGAGCATGT 3894 ||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||| Sbjct 534 TAAGAAACCTGTTATGACCCTGCCCTACGGCTCTACTCAGATAACTTGCCGTGAGCATGT 475 Query 3895 TAGCCAGTGGCTTAAA-GATTTGCAGAAGGAGGAGAACAAGCGAGCTAAGGCAGAGTTCA 3953 | | | | ||| ||| ||||||||| |||||||||| |||||||||||| |||| Sbjct 474 -ATCAGCTTGGTTACGTGATAAGCAGAAGGATGAGAACAAGCAAGCTAAGGCAGAATTCA 416 Query 3954 GAGAGCCTATGAAGGTACACGCTTTCGGCGATGCAGACAGC-GCTATGCCGCTAAAGTTT 4012 |||| ||||||||||| || || ||| | | || ||| |||| || | Sbjct 415 GAGAACCTATGAAGGTTCATATCTTTACTGATAAA-ATGGCAGCT-TGCCACTGATTCAG 358 Query 4013 GCTGAGTCTCTTATGACTAGCATTGTTTGGCACTCTATCGGCAAGGTTGTAGTAGCTGCG 4072 ||||| | | |||| || | || ||| | || || ||| ||||||| ||||| || Sbjct 357 GCTGAAACATTCATGAGCAGTCTAGTGTGGGAGTCAATTGGCGAGGTTGTGGTAGCAGCC 298 Query 4073 AGGGCTGGTATGGCTTACATCAAAGCCGTAACAAGCTCAGTGGCTAAGATGAATATGCCG 4132 | ||||||||| ||||| || |||||||| | | |||| || ||| || | |||| Sbjct 297 CGTGCTGGTATGAAGTACATTAAGGCCGTAACTAACACAGTTGCCAAGGCTAACAAGCCG 238 Query 4133 CTTGAGTGGACTACTCCAACAGGCTTTATTGTCCGTCAGGAGATTTACCAGTTCACAACA 4192 ||||| |||||||| || || || ||| | || | |||||| || || | | | | Sbjct 237 CTTGAATGGACTACACCTACTGGTTTTGTAGTGCTTCAGGAAATCTATGAAACCGCTAAT 178 Query 4193 CGTCAGGTAAATACTCAGCTGCTGGGTGGAACTAAGTTTGTGGTCAGCACTAAGAGTAAA 4252 |||||| | | |||||||| ||||| ||||||||||| |||| || | | | Sbjct 177 CGTCAGATTGACACTCAGCTTATGGGTAAGACTAAGTTTGTTATCAGTACACCTACTGAC 118 Query 4253 GATATTGATTATCATCGTATGATTAACTCCTGTGCGCCTAACTTTGTTCACTCAATGGAT 4312 | || | | ||| || ||| ||||| |||||| ||||||||||||||| |||||| Sbjct 117 AAGATGAACTTTCACCGCATGGTTAACAGCTGTGCTCCTAACTTTGTTCACAGTATGGAT 58 Query 4313 GCGAGCCACCTTAC 4326 |||||||| ||||| Sbjct 57 GCGAGCCATCTTAC 44 >seq93791 Length=429 Score = 176 bits (194), Expect = 1e-39 Identities = 297/418 (71%), Gaps = 9/418 (2%) Strand=Plus/Minus Query 27184 TATTTGCTGACCAAGCTCAGTTTATAATTGACGGCTCCAAGCCAGTTACTAAAGCTAACC 27243 ||||| |||| | || ||||| |||||| | || || || || || || ||||| | Sbjct 426 TATTTTCTGATAAGGCACAGTTCATAATTAAGGGAGCCTCACCTGTAAC-AAGGCTAATC 368 Query 27244 TTACCTTGCAGCAGGTCACTGCTTACCCAAACAACATACATGC-TCAGCCACAAGCTGGT 27302 | || | || || || | ||||||| | || || || ||| ||||| || | Sbjct 367 TGACGCTATCTCAAGTGACATCCTACCCAAGCCT-AT-CAGGCATCAACCACAGGCAGCA 310 Query 27303 GGAGAGAATATCTTCTTTGCTTATGATGCTAGTGGGTTTACTGGTATCCGCGAGTTGTTC 27362 || |||||| | |||||||||||||||||| ||| | ||||||| | || |||||||| Sbjct 309 GG-GAGAATGTATTCTTTGCTTATGATGCTGCTGGTTATACTGGTGTACGTGAGTTGTTT 251 Query 27363 ACTGATAACTACACAGACACTAAGAAAGCCTACCCAATCACTGACTATGTTAGTAAGTAT 27422 || || ||||| | || || ||| |||||||||| | |||||| ||||| || ||||| Sbjct 250 ACAGACAACTATGCGGATACAAAG-AAGCCTACCCCACCACTGATTATGTCAGCAAGTAC 192 Query 27423 ATAGAGGGTCAATGCACACAGCTGCTAGCTTCCTCTAACTTCAACTCTATGATGGTCAGG 27482 ||| ||| | || | ||| |||| ||| | ||||| | ||||||||| | | ||| Sbjct 191 ATACCCGGTAATTGTATCCAGATGCTGGCTACACCTAACCTGAACTCTATGGTAATTAGG 132 Query 27483 AC-AGAGATGAATCCATCTGTTGTATATGTTTATGATTGGCTATGGCAAGCGGAGCAGAA 27541 | |||||| ||| | | | || | ||||||||| ||||||||| | ||||| Sbjct 131 TCAAGAGAT-AATTTAAGTAACCTCTACATGTATGATTGGTTATGGCAAGATAATCAGAA 73 Query 27542 GGTACAGAGTGCGTGGCATAAGTGG-GTGTTTGATGGGGATGTCTTGTTCTTATTCTA 27598 ||| || ||||| ||||| || ||| || | ||||| || || |||| ||||||| Sbjct 72 GGTTCAAAGTGCTTGGCACAAATGGATTGATGGATGGAGAAGTTTTGTATGTATTCTA 15 >seq103945 Length=354 Score = 170 bits (188), Expect = 6e-38 Identities = 171/221 (77%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 7218 GCTCAGCAGATGCTTGTCAAGAGTCTCAATAAGCTTGAGCAGTTCAATGGGCTGAAGTCA 7277 |||||||||||||| ||||| ||||| |||||||| || | | || || |||||| Sbjct 8 GCTCAGCAGATGCTGGTCAAATCACTCAACAAGCTTGATAAGCTTCAGGGCCTTAAGTCA 67 Query 7278 CTTGATGGCCTGCGTCTGGCTCATGTGTGGTCGCCAACTAAAGGCGAGACAGCACTAGAG 7337 || ||||| | || | ||||| ||||| || |||||||| ||||| || ||||| Sbjct 68 CTAGATGGATTAAAGCTTGTGCATGTATGGTCACCTACTAAAGGTGAGACGGCCTTAGAG 127 Query 7338 GAGATAGTAGCTAACCGTGAATACCTCAATCAGTTTGAGGATATTGTATGGGGCTTTGAT 7397 || || ||||||||| | ||| | || | |||| |||||| || || |||| |||||| Sbjct 128 GAAATCGTAGCTAACAGAGAAGAGCTTGAGCAGTATGAGGAAATAGTTTGGGCATTTGAT 187 Query 7398 AATGACGATGTAGGCAACAAGCTTAACCTTGACTG-CTCCC 7437 || ||||||||||| |||||||||||||||| ||| ||||| Sbjct 188 AACGACGATGTAGGTAACAAGCTTAACCTTGCCTGCCTCCC 228 >seq90964 Length=390 Score = 102 bits (112), Expect = 2e-17 Identities = 198/283 (70%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 33228 AGGTGTAGCTGATAGTGAAAT-CAGAACCGTTATTAACATGCTTCAAGATAAGGCTCATG 33286 ||| ||||| ||||| ||||| |||| | || |||| ||||| | | ||| | | Sbjct 295 AGGAGTAGCCGATAGAGAAATACAGA-CTGTCCTTAATATGCTAGAGAACAAGCAACTGG 237 Query 33287 ATGAGTCAATCTCCGCTCGTGCCATGCAATCCTTACACCCTAACT-TGGCAGCTGAAACC 33345 |||| ||||| || ||||| ||| | || | || |||||| | | ||| ||| Sbjct 236 ATGAAGGTATCTCAGCCCGTGCAATGGATTCACTTCATCCTAACAATTGAAGCAACAACA 177 Query 33346 ACTGATGGTCTGCGATTTGTGGACTTGGTGGATTCATCAACAGCTAGTGTGGATAAGTAT 33405 | |||| |||| ||||| || || ||||| |||| |||| |||| ||||||||| Sbjct 176 CTTAATGGCTTGCGGTTTGTAGATTTAATGGATACATCCCAAGCTGGTGTTGATAAGTAT 117 Query 33406 GTACGAGATGCAGCAGC-TCAGGCCGCCTTTGCCAAGTACGGTATGCGCTCACGCCGTCA 33464 || || || | |||| ||| ||| | ||||| || ||||| | |||||||| || Sbjct 116 GTCCGTGAACTAACAGCATCA-GCCTCATTTGCACGTTATGGTATTGGGTCACGCCGACA 58 Query 33465 GGTGGAGGATACTATCACTG-AGGCATTCAAGCGTCACCGCCA 33506 | |||| ||||| || |||| ||| || |||| |||||| || Sbjct 57 GATGGAAGATACAATTACTGAAGGTTTTAAAGC-TCACCGTCA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144943379739000