Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq31280 136 4e-27 seq80465 86.0 7e-12 seq70509 86.0 7e-12 >seq31280 Length=10079 Score = 136 bits (150), Expect = 4e-27 Identities = 302/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 143117 CATCAGGTCGTTGATTTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCC 143176 ||||| | ||||| || | ||| ||||||| |||||| | ||||| | || || || Sbjct 1332 CATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACC 1391 Query 143177 TTTGTTGTTCTTAAGTACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAA 143236 |||||| || || || | || | || ||||| |||||||| || |||||| ||| Sbjct 1392 ACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAG 1451 Query 143237 TGTTGCGGCACCACCACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTG 143296 || || || || ||||| || ||||| || ||||||||||| || || || |||||||| Sbjct 1452 CGTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTG 1511 Query 143297 TTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTC 143356 || |||| || ||| || ||||| |||||||| | || || Sbjct 1512 CTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAG 1571 Query 143357 TGCACGCAACATCCCCGCGTTAATGCCAATACCTGCACGCT----TACTGATATACTCAA 143412 || || | ||||||||||| ||||||||||| || | || || | | ||| Sbjct 1572 CGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTAT-TTCACAA 1630 Query 143413 TAATGCTTGCACTGGCTTTGTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACAC 143472 || ||| | | || ||| || || | || ||| ||| |||||| | |||| Sbjct 1631 TAGCGCTGGAGGTCGC---GTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACAC 1687 Query 143473 AAGAGCTAAACTGACGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAA 143532 | ||||| |||||||| || || ||||| | || | ||| ||||| || |||| || | Sbjct 1688 AGGAGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGA 1747 Query 143533 TTTGACGAGTAGATACGGCGTCATAAAAACG 143563 ||| | || || | || || || ||||| Sbjct 1748 TTTTAAACGTGGAAATCGCATCGTAGAAACG 1778 >seq80465 Length=554 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/80 (88%), Gaps = 4/80 (5%) Strand=Plus/Plus Query 71275 ATTGGTCTCCACAGAATGACTCGAACATTCGACCTCCTGGTCCCAAA-CCAGGCGCTCTA 71333 |||||||||| ||| ||||||||||| ||||| |||||||||||| ||||| ||||| Sbjct 450 ATTGGTCTCCGCAGGGTGACTCGAACA-CCGACC-CCTGGTCCCAAACCCAGGTGCTCTG 507 Query 71334 CCAAGCTGAG-CTATGCGGA 71352 |||||||||| ||||||||| Sbjct 508 CCAAGCTGAGCCTATGCGGA 527 >seq70509 Length=725 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 71211 GGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCTACTAAGCTAAATCA 71270 ||||||||||| ||||| || ||||||| ||| ||||||||| || ||||| | | Sbjct 119 GGAATCGAACCCACGACCCACTGATTACAAAACAGTAGCTCTACCTTCTGAGCTATACCG 60 Query 71271 GC-AAATTGGTCTCCACAGAATGACTCGAACATTCGACCTCCTGGTCCCAAACCAGG 71326 || |||||||| || ||| |||| |||| |||||| |||| ||||||| |||| Sbjct 59 GCGTAATTGGTCCGCATTGAAGGACTTGAACCCTCGACCCCCTGCTCCCAAAGCAGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544075591188000