Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq31280 183 3e-41 seq38457 116 4e-21 seq34527 111 2e-19 >seq31280 Length=10079 Score = 183 bits (202), Expect = 3e-41 Identities = 284/403 (70%), Gaps = 2/403 (0%) Strand=Plus/Plus Query 58355 GTTGATCTGAACACCGTAGTCAGTACGGCGCTCGCGGTTGTTCTCAATACCACGGTTGTT 58414 ||||| ||| ||||||||||| | | || ||||||| || | |||||||||||| Sbjct 1341 GTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTT 1400 Query 58415 CTTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGGTAATACATGGTTGCTGA 58474 ||||| || | || | || | | | ||||||||||| || ||| || |||| Sbjct 1401 TTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGC 1460 Query 58475 GCCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCAACGAACTTCTTGATGAA 58534 ||||||||||| || ||||| |||||| |||| | ||| | |||| ||| Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 58535 CGGGATCGTACCGGTATGAGTCATCT-CACCGTCGCGGATAGAGGAACCCAGGGCACGGA 58593 |||||| ||||||||| | | || ||||| |||| || | | ||||| || |||| Sbjct 1521 CGGGATACAACCGGTATG-GAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGA 1579 Query 58594 TAGCGCCGAAGTCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTGC 58653 || || || || ||| ||||| || || | || ||||||||||| || ||| || Sbjct 1580 TACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGG 1639 Query 58654 CAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAACT 58713 || || | ||| |||||| |||| ||| | | ||||||||||| |||||||||| Sbjct 1640 AGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACT 1699 Query 58714 GACGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGGGAG 58756 ||||||| | |||||||| || | |||||| || || || || Sbjct 1700 GACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAG 1742 >seq38457 Length=3703 Score = 116 bits (128), Expect = 4e-21 Identities = 91/105 (87%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 146289 TCGTA-GCGGCTCTTGCGGGTTTTTAGAAACAGACCAACAATA-TAAATGCAAACGACAA 146346 ||||| ||| || |||||||||||||||||| ||||| || | ||||||||||||| | Sbjct 2856 TCGTATGCGACT-TTGCGGGTTTTTAGAAACGGACCACAAAAAGTAAATGCAAACGATAG 2914 Query 146347 TGAGTTCAAAGTAGCAGCCTAACGGCCAATGCGCTTTCTGGGTAT 146391 |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 2915 TGAGTTTAAAGTAGCAGCCTAACGGCCAACGCGCTTTCATGGTAT 2959 >seq34527 Length=8391 Score = 111 bits (122), Expect = 2e-19 Identities = 90/105 (86%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 146289 TCGTA-GCGGCTCTTGCGGGTTTTTAGAAACAGACCAACAATA-TAAATGCAAACGACAA 146346 ||||| ||| || |||||||||||||||||| ||||| || | ||||||||||| | | Sbjct 3099 TCGTATGCGACT-TTGCGGGTTTTTAGAAACGGACCACAAAAAGTAAATGCAAACAATAG 3157 Query 146347 TGAGTTCAAAGTAGCAGCCTAACGGCCAATGCGCTTTCTGGGTAT 146391 |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 3158 TGAGTTTAAAGTAGCAGCCTAACGGCCAACGCGCTTTCATGGTAT 3202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517939030560000