Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq31280 129 6e-25 seq66454 107 2e-18 >seq31280 Length=10079 Score = 129 bits (142), Expect = 6e-25 Identities = 272/402 (68%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 14844 TTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTC 14903 |||| |||| |||||| || | ||||| | |||||| | || ||||| |||||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 14904 TTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCA 14963 || | || || ||| |||| || || ||||||||||| ||||| | || || ||||| Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCG 1461 Query 14964 CCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAA 15023 || |||||||| ||||| || ||||| ||||| || || ||||| || || || |||| Sbjct 1462 CCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAAC 1521 Query 15024 GGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATC 15083 || || || ||||| |||| || | ||| ||| || || || Sbjct 1522 GGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATA 1581 Query 15084 ATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATAATACTGTTAC 15141 ||| ||||| || || ||||| || || ||| ||| | || || | |||| | | Sbjct 1582 CGACCCGCGTTAATACCAATACCTGCGCG-TTG-TGAAACGTATTTCACAATAGCGCTGG 1639 Query 15142 TTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACT 15201 | || || || |||| ||| |||||| |||||| | ||||| || || |||| Sbjct 1640 AGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACT 1699 Query 15202 GACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCA 15243 |||| || || ||||| | || | ||| || || || |||| Sbjct 1700 GACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq66454 Length=1623 Score = 107 bits (118), Expect = 2e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 103764 TATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 103823 ||||||||| |||||||||||| |||||||||||| ||| ||||||||| ||||||||| Sbjct 1210 TATTTGGTGATCCCTGCTGGACTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCT 1269 Query 103824 AACC-ACTGAGCTAAGGGGCC 103843 |||| ||||||||||||| || Sbjct 1270 AACCAACTGAGCTAAGGGACC 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504964996492000