Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq2347 145 4e-30 seq43510 109 3e-19 seq60516 84.2 1e-11 >seq2347 Length=4848 Score = 145 bits (160), Expect = 4e-30 Identities = 148/191 (77%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 21676 CCTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACAT 21735 |||||||||| | || ||||||||| ||| ||||| ||||| ||||||||||||||||| Sbjct 1650 CCTGAGCTGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACAT 1591 Query 21736 CGCCAGCTACGCGCTGCTGACGCACCTCATGGCGGCCACGGT---CGGCATGCAGGCCGA 21792 ||||||||| ||||||||||| ||| |||| |||| ||| ||| ||||| | | Sbjct 1590 CGCCAGCTATGCGCTGCTGAC---CCTGATGGTGGCCCAGGTCACCGGGCTGCAGCCGGG 1534 Query 21793 GAAGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAA 21852 | ||||||||| | |||||||| ||||| || || | || ||| |||| ||| || | Sbjct 1533 CGAATTCATCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAGACCGA 1474 Query 21853 ---GCAGCTGA 21860 |||||||| Sbjct 1473 TCTGCAGCTGA 1463 Score = 107 bits (118), Expect = 9e-19 Identities = 266/401 (66%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 21140 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21199 |||||||| ||||| || ||| | ||| ||||| ||||||| |||||| ||| Sbjct 2066 GACCGCACCGGCACCGGGACCTACAGCGTCTTCGGCTACCAGATGAGATTCGACCTGGCC 2007 Query 21200 GAGGGCTTCCCCCTGCTCCAGAAGAAGACCACCCCCTTCACCACGATCTTCACCGAGCTC 21259 |||||||| |||||| || | |||| || | | | ||| || ||| || Sbjct 2006 GAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACGAACTG 1947 Query 21260 TCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGC-TGCCACAT 21318 |||| | |||||||| ||||||| | || || || | || ||| || | ||| Sbjct 1946 CTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGTC-CAT 1888 Query 21319 CTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTGGCG 21378 ||||||||||||||| | | || | || || ||| |||| || ||||||||| Sbjct 1887 CTGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGTGGCG 1828 Query 21379 CAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGCTGCT 21438 |||| | | |||||||| | ||||||||| | ||| || || || | Sbjct 1827 CAGCTGGCCGGCACCCGATGGTCGCCATATCGACCAGATCGCCGGGGTGGTGGACATGAT 1768 Query 21439 GCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGCTCGA 21498 | | | || ||| || ||| | ||||| |||||||| |||| | | || Sbjct 1767 CCGCGCCAAGCCCGACTCGCGGCGCCTGATCGTCTCGGCCTGGAATCCGGCCCTGGTGGA 1708 Query 21499 CCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21539 | ||||||| ||| | |||||||||||| |||||||||||| Sbjct 1707 CGAGATGGCGCTGCCGCCGTGCCATGCGCTGTTCCAGTTCT 1667 >seq43510 Length=3912 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 21677 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 21736 || |||||| | || || |||||||||| ||||| |||||||||||||| ||||||||| Sbjct 743 CTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATC 684 Query 21737 GCCAGCTACGCGCTGCTGACGCACCTCATGGCG 21769 |||||||||||||||||||| ||| | ||||| Sbjct 683 GCCAGCTACGCGCTGCTGACCCACATGGTGGCG 651 >seq60516 Length=573 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 21677 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 21736 || |||||| | || || |||||||||| ||||| |||||||||||||| ||||||||| Sbjct 505 CTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATC 564 Query 21737 GCCAGCTAC 21745 ||||||||| Sbjct 565 GCCAGCTAC 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235922352026900