Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq33108 178 1e-39 seq31280 131 2e-25 seq49234 102 9e-17 seq34305 91.5 2e-13 seq72596 89.7 5e-13 >seq33108 Length=3479 Score = 178 bits (196), Expect = 1e-39 Identities = 149/183 (81%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 60698 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60757 ||| ||||| || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 60758 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60817 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 60818 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 60877 || || || |||||||| |||||||| ||||| ||||| ||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 60878 CTC 60880 || Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 131 bits (144), Expect = 2e-25 Identities = 271/401 (68%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 139541 TTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTT 139600 || ||||| || || || ||||| ||||| | ||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 139601 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 139659 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 139660 GCCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 139719 ||||||||| | |||||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 139720 AGGAATAACACCAGTATGACGCACTTCACCTGTGCCAATCTTAGAACCTTCGGCACGAAT 139779 || ||| ||| ||||| ||||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 139780 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 139839 ||| ||||||||||||| || ||||||| || | |||| ||||| | || Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGGA 1640 Query 139840 AGCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTG 139899 | | ||||| || | ||| || || ||||| | ||||| || || ||||| Sbjct 1641 GGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTG 1700 Query 139900 CCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCA 139940 || ||||| ||||| || | ||| || || || |||| Sbjct 1701 ACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 102 bits (112), Expect = 9e-17 Identities = 207/301 (69%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 62692 ATTCTGCTGGAATATCGCTGATGTCAGGAACTTCAGTATCTTTTATACTAAACCCACGTT 62751 || |||||||||| || ||||| || |||||||| | || ||| ||||| Sbjct 254 ATGCTGCTGGAATGTCTGATATGTCGTTAAATTCAGTATTGGTAATCTTAATACCACGAC 313 Query 62752 TTAAGCATTCCATTA--TAATGTCTGATTGACGCTTTCGCAAAAATTCTAACTTGTCGTA 62809 | |||||| |||| |||| |||| || ||| | ||| || ||| || | || Sbjct 314 GAAGGCATTC-ATTAACTAATTGAACATTGGCGTTTT-GTAAATATAATAATTTATTATA 371 Query 62810 AAAGAACGTAACATGACCAGAACCTAAAATAAACTCGGAAGATATTTTAAAATCTTTAAC 62869 || || ||||||||||| | ||||||| | | | | ||||||||||| || | Sbjct 372 GAA-AATGTAACATGACCTGTACCTAAATGTAGGTAGTACTG-ATTTTAAAATCATTGAT 429 Query 62870 CCGCTTACCATTTGCCACGTGTTTACGAACTATACCAAAAACGCGTGGCAATTCACGGTA 62929 || |||||| | ||||| |||||||| ||| || || ||||||||||||||||| Sbjct 430 TCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTA 489 Query 62930 TTCTGCGATTAAATGTTGATCAGCAAGTTCAGATACTAAAGTCAAATTAATACGAGTCAT 62989 ||| || || | |||||| ||||| | ||| |||| | ||| ||||| ||||| Sbjct 490 TTCAGCCATAAGATGTTGGTCAGCTAATTCTTGTACTGGTACGAGATTGATACGGGTCAT 549 Query 62990 T 62990 | Sbjct 550 T 550 >seq34305 Length=2218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60711 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60770 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 60771 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60830 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 60831 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCCTCAAT 60883 || |||| || || ||||| || ||||| || || || || ||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq72596 Length=790 Score = 89.7 bits (98), Expect = 5e-13 Identities = 176/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 41379 ACACCAAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACACTC 41438 ||||||| |||| | ||||| | ||||||| ||| | |||||||||| ||| Sbjct 774 ACACCAATATTAAATCTACCATCGAATTTTTCATTTCCATTTTCATCTTTCCATGAACT- 716 Query 41439 AAGAAACTACGACAACCCATTGGAGAAACAGGAATAGAT---GAACCGGTGATAGCTTTA 41495 |||||| |||||||||||||||| ||| ||||| ||| ||| || | |||| Sbjct 715 AAGAAAGAACGACAACCCATTGGACTAACTGGAATTGATTCAGAATGCGTCA---CTTTT 659 Query 41496 TTGTTC---TTAGCCGAAATGATGTCAGGATACATTCTTTTACTTGCACACTCTAGAGCA 41552 || ||| | |||| |||| || ||||| ||||||||| |||| | | || Sbjct 658 TTATTCAAGTCTACCGATATGAAATCTGGATATATTCTTTTAGATGCAGTTTTAATTGCT 599 Query 41553 AGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAAC 41612 | | || | |||||| || ||||| | || | |||||| ||||| |||| || || Sbjct 598 TGTTCTTTTAAATCATAATTAGGATCATTTTCTTTAAGATTTACACCATCTTTAAGAAAG 539 Query 41613 ATAACAAGTTTAGGGAA 41629 | | || |||||| || Sbjct 538 AATATAACTTTAGGAAA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533328324356000