Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq40687 84.2 1e-11 seq47236 82.4 3e-11 >seq40687 Length=4650 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 8776 TGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGGAAATCTTACAG 8835 ||||| | || || ||||| | || || |||||||||||||| || || ||||| | Sbjct 2424 TGATTCTTCCGCGCTCTGGCCTGGGCCACAAACATGGTATTGTCCTGGGTAATCTGGTTG 2483 Query 8836 GTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAATCGC--TCTAC 8893 |||| |||||| || ||||| || |||| |||||| | ||||||||| | Sbjct 2484 GTCTGATTGATGCCGACTATCAGGGACAACTTATGGTATCGGTATGGAATCGCGGGCAGG 2543 Query 8894 AAAGCCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATTGTGCCTGTAAT 8953 ||||| ||||| || | || || || || || || ||| | ||| |||| ||||| | Sbjct 2544 AAAGC--TTTACGCTTCAGCCGGGCGATCGCATGGCCCAGCTGGTT-TTGTCCCTGTCGT 2600 Query 8954 GCAGCCTGAATTTGTTATAGTAGACTCTTTTGAAGC 8989 ||| | ||||| | | |||||| ||||| || Sbjct 2601 CCAGGCCGAATTCAATCTGGTAGACGAGTTTGACGC 2636 >seq47236 Length=1665 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 54571 CTCCCCCAGCATGGGTAATGGAACCACCATCGAACTCTCTCCAATTGCTGGACAAAACAT 54630 |||| |||| |||| |||| | ||| |||||||||||||| |||||||| |||| | Sbjct 532 CTCCGGCAGCGTGGGCAATGCAGGAACCGTCGAACTCTCTCCAGTTGCTGGATCAAACGT 473 Query 54631 TCTCAATATCCGAGAAGGAATTATTGCAGACCAAATTAAATTGAGATATTTACAAGATTA 54690 ||||| |||||||| ||||| || ||||| ||| | |||||||| || | || Sbjct 472 TCTCAGTATCCGAGCCGGAATCATCAGCGACCAGTCAAAAGTAAGATATTTGCAGCAGTA 413 Query 54691 CAT 54693 ||| Sbjct 412 CAT 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218295987765800