Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027384.1 Length=37359 Score E Sequences producing significant alignments: (Bits) Value seq74251 165 2e-36 seq60360 129 1e-25 seq53231 104 6e-18 seq83134 98.7 2e-16 seq98912 82.4 2e-11 >seq74251 Length=708 Score = 165 bits (182), Expect = 2e-36 Identities = 326/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Minus Query 2971 CATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTGCTGCCGA 3028 || ||| ||||||| |||| || ||| || ||| ||| || || ||| | || Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 3029 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCAC 3087 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 3088 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCCG 3147 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 3148 GGCTGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTACGTGACGCC 3207 || || |||| ||||||||||||| | | ||| | || | ||| ||||||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGCC 449 Query 3208 TGCACCAAGGGCG-GCATCCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACGTCAA 3266 | || || |||| || | |||||||||||||| || ||||||| || ||| Sbjct 448 ATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3267 CCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-TATGAAGA 3325 ||| ||||||| ||||| ||| |||||||||| ||| |||| | Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3326 ACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCTG 3384 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCATT 287 Query 3385 TGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3434 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 286 TGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq60360 Length=752 Score = 129 bits (142), Expect = 1e-25 Identities = 219/312 (70%), Gaps = 9/312 (3%) Strand=Plus/Plus Query 26131 GCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAG---CTGGCCGACGAA 26187 || ||||||||||| || ||||| |||||||||||||| |||| ||||||||||| Sbjct 53 GCCACCGGCAAGGCCGTCTCGGAGACGGTCGCCGAGTT---CAAGCGCCTGGCCGACGAG 109 Query 26188 CCAGTCAAAGCCTCGCAACAGCTCAACGAGAAATATCACTACCTGACCGCCTCGGTTTAC 26247 || ||| |||||| ||| |||||| | || ||||||| |||||| |||| ||| Sbjct 110 CCGACCAAGGCCTCGGCCGCGCTGAACGAGCAGTACAACTACCTCACCGCCGCGGTCTAC 169 Query 26248 GAGCAGATAGCCGCCCTCGATCAACAAGGCGATTCGCTGGGTGCCGCCCAACTGGCCATG 26307 || ||||| || || || | || ||| | | | |||||| | |||||| | Sbjct 170 GACCAGATCCGGGCGCTGGAGGAGCAGGGCAACAAGACCGCCGCCGCCAACCTGGCCGAG 229 Query 26308 GACGCCTATAGCCAG-GCAATGGACGAGCGGGCGAGCCAGATCGTCGAGAACCTGGGCAC 26366 | ||||| ||| | || || | ||||| || | | ||| |||||||| || || Sbjct 230 GCGACCTAT-GCCGGCGCCTTGCAGGAGCGCGCCAAGAACATCAAGGAGAACCTCGGAAC 288 Query 26367 CCTGGAAACCGCTTGGAAGACCGTTGCCGGGGTGGCCAAGGGCGCCTGGGACGAAATGCT 26426 | | || | || ||||||| ||| || | | |||||||| |||||||||| ||||| Sbjct 289 CATTGAGTCTGCCTGGAAGAGCGTCACCAGCGGCGCCAAGGG-GCCTGGGACGCGATGCT 347 Query 26427 CGGCGTGGGCCG 26438 | | | ||||| Sbjct 348 CAACATCGGCCG 359 >seq53231 Length=1021 Score = 104 bits (114), Expect = 6e-18 Identities = 170/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 21650 CACTGCTGAGCT-GGTAGTGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGG 21708 |||||| ||||| ||| || || ||| | || |||||||||||||||||||| | Sbjct 1 CACTGCCGAGCTTGGTGGTCGAGTCGCGCCTGACCTCGGACACCGCCTGGTTCCTGCTCG 60 Query 21709 ACACCACCAAGCCGGTAAAACCGTTCATCTACCAGCCCAGGAAGAAGCCGGTATTCGTTT 21768 |||||| |||||| || || |||||||| || | ||| ||||| |||| Sbjct 61 ACACCAGCAAGCCAGTGCGGCCCTTCATCTATCAAGAGCGCAAGGCACCGGT-CTCGTCC 119 Query 21769 CCCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAG---CTGAAGTTCGGCG 21825 || || ||| || |||| ||||| |||||| |||||| |||||||| | Sbjct 120 AGCAAATCGACCCCGAGGCGGACGACGTTTTCAAC---CGCAAGGAATACAAGTTCGGTG 176 Query 21826 CCGAGGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTACGGCTCCACCGGCA 21885 | || || || || || | || || |||||||||||| ||||||| ||||| ||||| | Sbjct 177 CGGAAGCGCGGGCAGCGGGGGGCTATGGCTTCTGGCAGATGGCCTATGGCTCGACCGGTA 236 Query 21886 C 21886 | Sbjct 237 C 237 >seq83134 Length=949 Score = 98.7 bits (108), Expect = 2e-16 Identities = 225/332 (68%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 466 ATAGGCCGGGTTAGCACTGATGATCGCGAGGCCGCCATTGATCTGCCGTTGGACGCGCTT 525 ||||||||| || ||||| | | | || ||||||| |||||| || || | ||||| Sbjct 738 ATAGGCCGGATTGGCACTCAACACCTGGATTCCGCCATCGATCTGGCGCTGTAGCCGCTT 679 Query 526 GGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCTTCGTCACGAACCTCATTGCA 585 ||| |||| | ||| ||||| || ||||||| || ||| | | | | |||| Sbjct 678 GGCATACAGCAAATGATCAAGGCG-ATTACGTAGAAGGCCTCGGCCTGCAACGTGTTGCG 620 Query 586 ACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGGCTCCATTGAGTCACCGCC 645 || |||| |||||||| || |||||||| | || || || ||||||| ||| | Sbjct 619 ACGTAGGTCCATCATCACAGTGTCGCCATCTGAAAGCACCGGTTCATTTGAGTCTCCGTC 560 Query 646 GATGCGGACGGCCGACATATTCGCGAT-CTCCAGGCC-TTGCTTCCGCAAGCTGTAGCGA 703 | || || || | | ||| | | |||||| || || | || ||| ||| || || Sbjct 559 AACCCGCACCGCTGCTA-ATTGGGAAGGCTCCAGCCCCTTACGTC-GCAGGCTATACCGC 502 Query 704 GTGAATGCCAACTGAGCGAGTATCCGCGCCCCCTCTGTCCAGGAGCCGTGACCAGCGCTC 763 || || || | ||| | || | | ||||||| |||||| ||||||||| || Sbjct 501 GTAAAGGCGAGCTGGGTAAGCACCTTGCCCCCCTCATTCCAGGCGCCGTGACCTTGACTG 442 Query 764 ACCCGAGCGTCATACAGAGGGATATAGGCGTA 795 | ||||||||||| || ||||| |||| || Sbjct 441 ATACGAGCGTCATAAAGGGGGATGAAGGCATA 410 >seq98912 Length=625 Score = 82.4 bits (90), Expect = 2e-11 Identities = 216/327 (66%), Gaps = 12/327 (4%) Strand=Plus/Plus Query 9632 AAAATCCACATCGCCAAGACCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9691 || |||||| | ||||||| |||| | |||||| || |||| |||||| || ||||| Sbjct 173 AAGATCCACGTTGCCAAGAAAGAGCTAGCCATGGATGACGACAGCTATCGAGCGATGCTC 232 Query 9692 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTTGACCAGGTA 9751 || ||||| || || ||| ||| | ||||| | || ||||||||||| | || Sbjct 233 GCCCGCGTGGCCGGTGTGACTTCGTCTAAGGATCTCGGCCCGCGCCAGGTCGGTGCCGTG 292 Query 9752 CTGGTCGAACTCCAGCGTCTGGGCTGGAAACCGAAGAGCAACCGGCAAGGCCGGGCGACG 9811 || ||| || |||| |||| ||||| || ||| || |||||||| | | Sbjct 293 CTACGCGAGTTCGAGCGCTTGGGATGGAAGCCAAAG-----CC-----GGCCGGGCCAAG 342 Query 9812 CCAAAAG-TGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAG 9870 || | | || | | | | ||| || | || | |||| ||| |||| |||||| Sbjct 343 CCGCATGCGGCGGTAGATCGGGCGAAGCTTG-TCGGCAAGATCGAGGCGCAACTGGCCGA 401 Query 9871 CGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTCGAGCG 9930 || ||||| ||| ||||||||| ||||| ||| | | |||||||||| Sbjct 402 GGCTGGCCGCCCTTGGGACTACGCCGATGCACTGGCCAAGCGACTTTATAAGGTCGAGCG 461 Query 9931 GGTCGAGTGGCTGGACGACAGCCAGCT 9957 | || ||||| || | || ||||| Sbjct 462 CCTGGAATGGCTCGATGCCAAACAGCT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119242408800600