Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq28361 105 1e-17 seq2347 105 1e-17 seq60516 95.1 2e-14 >seq28361 Length=3781 Score = 105 bits (116), Expect = 1e-17 Identities = 190/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGC-GAT 197671 ||||||| ||||| || | |||| || | ||| |||| || || ||| | || Sbjct 2731 TGAAACAGTATCTGGACTTAATGCGCTACGTGCTGAACGAAGG-CACACCAAAATCTGAC 2673 Query 197672 CGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAA 197731 ||||| || ||||| |||||||| | ||||| | ||||||||||||| || ||| | Sbjct 2672 CGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGGAT 2613 Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 || || || | ||||||||||| || ||| | || || || || ||||| |||||| Sbjct 2612 GGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGCTG 2553 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 ||||| || ||||| ||||||| || ||| |||| ||| || | || ||| Sbjct 2552 TGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATCTGG 2493 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 |||||| |||||| | || || || || || Sbjct 2492 GATGAGTGGGCAGATGAGCAGGGCAATCTGGGACC 2458 Score = 93.3 bits (102), Expect = 6e-14 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAG-TGCGGATTTTTTCCTCGGCGTGCCGTTCAACAT 198387 || || |||||||| || || || |||| | ||||||| || ||||||| ||||| Sbjct 2258 CTCTCCTGTCAGCTTTACCAGCGTTCCTGCG-ACATTTTCCTGGGGCTGCCGTTTAACAT 2200 Query 198388 CGCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGA 198447 ||| || || | || ||||| ||||| || || ||| | ||| | || || Sbjct 2199 CGCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGA 2140 Query 198448 TTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCT 198507 || | ||||| ||||| || || || || ||| || || ||||||||||| || Sbjct 2139 CTTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCT 2080 Query 198508 CCAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATC 198567 || |||||||| || ||| | |||||||| ||| | || || || || || | || Sbjct 2079 GCAACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTC 2020 Query 198568 TATCTTCGATTATAAATTCGAAGATTTTGAGAT 198600 | || || ||| ||||| ||||||||||| Sbjct 2019 GCTGTTTGACTATCGTTTCGACGATTTTGAGAT 1987 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 198039 AAGAGCACGACCAGATCTCTAAGGTGATTGACCAGCT---GCGTAACGATCCTGACAGTC 198095 ||||| || |||||| | || |||||||| ||| | ||| |||||| || | Sbjct 2413 AAGAGATTGATCAGATCACCAAAGTGATTGAACAGATCAAGCG---CGATCCGGATTCCC 2357 Query 198096 GCCGTATTATTGTCAGCGCATGGAACGTGGGTGAGTTGGATCAAATGGCGTTAGCTCCGT 198155 |||| || |||||| || ||||||||||| || ||||| |||||||| | ||||||| Sbjct 2356 GCCGCATCATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATGGCGCTGGCTCCGT 2297 Query 198156 GTCATGCGTTCTTTCAGTTCTAC 198178 | ||||| || || ||||||||| Sbjct 2296 GCCATGCCTTTTTCCAGTTCTAC 2274 >seq2347 Length=4848 Score = 105 bits (116), Expect = 1e-17 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||| ||||| ||| || || | |||||||||||||| ||||||||||| Sbjct 1643 TGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAGC 1584 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAAC---ATGGTGCCGGGCGATTTC 198451 || || | || | ||||| ||| ||||| | | || ||||||||| ||| Sbjct 1583 TATGCGCTGCTGACCCTGATGGTGGCC---CAGGTCACCGGGCTGCAGCCGGGCGAATTC 1527 Query 198452 ATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAG 198511 || ||||| |||||||| |||||||| | ||||| ||||||||| || | || ||| Sbjct 1526 ATCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAGACCGATCTGCAG 1467 Query 198512 CTGACGCGTGAGCCGTTACCTTTACCGA 198539 ||||| || |||||| | || | |||| Sbjct 1466 CTGACCCGCGAGCCGCTGCCGCTGCCGA 1439 >seq60516 Length=573 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 || ||||| | ||||| || ||||| ||||||| || || ||||||||||| ||| Sbjct 152 GGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCATGAACTACTG 211 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 |||||||| || |||||||| | ||| || ||| | || |||||||| | ||| ||| Sbjct 212 TGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTCAGCATCTGG 271 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 |||||| || || || || ||||| ||||| Sbjct 272 GACGAGTGGGCCGACGAGAACGGCAACCTCGGCCC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767940775924000