Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11452 122 7e-23 seq55769 91.5 1e-13 seq42639 89.7 4e-13 >seq11452 Length=368 Score = 122 bits (134), Expect = 7e-23 Identities = 199/283 (70%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||| |||||||| ||||| |||| || || |||| || ||||| Sbjct 283 CCAAAGATCGTCAATGGACCTGAAATTTTAAACAAATTCGTTGGAGAATCTGAGAAAAAT 224 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| || ||||| || || |||| |||| | ||| | |||| | | || | Sbjct 223 ATCCGAGAATTATTTGCAGAAGCAGAAGTAGAATATAAA-GCCAAGGGTGACGAATCTGG 165 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601 ||| ||||| || ||| | |||||||| || ||||| ||||| || |||| || Sbjct 164 TTTACACATAATCATATTTGATGAATTAGATGCAATTTGTAAACAGCGAGGCTCGACTGG 105 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 ||||| || || || || | ||||||||||| | | ||||| | || || || Sbjct 104 TGGTGGAACCGGGGTTGGAGATTCGGTTGTCAATCAGTTATTATCAAAGATGGATGGGGT 45 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 | |||||||||||||||||| | ||||| ||||| ||| || Sbjct 44 CGATCAACTGAATAATATTTTAATCATTGGAATGACGAATCGA 2 >seq55769 Length=1313 Score = 91.5 bits (100), Expect = 1e-13 Identities = 240/362 (66%), Gaps = 16/362 (4%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||| || | ||||| || || | | || || || || || || |||||||| ||| Sbjct 568 CCCAAAGTTATCAATGGGCCCGAGGTACTTAACAAGTACGTCGGCCAGTCGGAAGAGAAT 627 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | || | ||||| || || || | ||| | || | |||| | | | ||| Sbjct 628 ATCCGGAAGCTCTTTGCCGATGCAGAGAAGGAATATGAA-GAGAAGGGTGACGATAGTAG 686 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 || || |||| || | ||||| | ||||| |||| || || ||||| ||||| | Sbjct 687 CTTACATGTTATCATCTTCGATGAGCTAGACGCCGTCTGCAAACAGAGAGGGTCTGGAGG 746 Query 19608 AAATGGAGTACA--------TGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 | |||||||| ||||| || || ||||| || ||||| ||| | || || Sbjct 747 AG--GGAGTACAGGCGTTGGTGACAGCGTCGTTAATCAGCTGCTGTCGAAACTGGATGGC 804 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || |||||||||||||| || | | || || |||||||| ||| | || |||| ||| Sbjct 805 GTGAACCAACTGAATAACATCCTTCTCATCGGTATGACTAACAGAATCGATATAATTGAC 864 Query 19720 --AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATG 19777 ||||| | | || |||| || | ||| | | || ||||| | | | ||||||| Sbjct 865 GAAGCGC--TGCTGCGTGCCGGCCGTCTTGAAGTCCACATGGAAATCACCCTTCCCGATG 922 Query 19778 AA 19779 || Sbjct 923 AA 924 >seq42639 Length=2382 Score = 89.7 bits (98), Expect = 4e-13 Identities = 188/279 (67%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 |||||||| || |||| || || || || |||||||||||||||||| | ||| | Sbjct 726 AATGGTCCAGAGGTCTTGAACAAGTACGTGGGTCAATCGGAAGAAAATATTCGAAAGCTT 785 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 || || ||||||| ||||| | | || | |||| | | ||| | | |||||||| Sbjct 786 TTCGCAGACGCTG-AGAAGGAATACAAGGAGAAGGGTGATGAGAGTGGTCTACACATTAT 844 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA---------AA 19610 || | || || | || || | ||||||||| |||| ||||||| | | Sbjct 845 TATTTTTGACGAGCTTGATGCCGTTTGTAAGCAACGAGGATCTGGTGCAGGCGGAGGCAC 904 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| ||| |||| ||| ||||| || | || || || | ||||| || | ||||| Sbjct 905 TGGTGTAGGCGACAGTGTAGTCAACCAGTTGCTCTCTAAGCTTGACGGCGTGGATCAACT 964 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 || || || | ||||||| ||||| || || |||| Sbjct 965 TAACAACATACTGCTTATTGGAATGACGAACCGAATGGA 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396824827451500