Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq35206 659 0.0 seq43257 123 9e-24 seq47236 109 2e-19 seq44976 89.7 2e-13 seq64133 82.4 3e-11 >seq35206 Length=1909 Score = 659 bits (730), Expect = 0.0 Identities = 943/1306 (72%), Gaps = 23/1306 (2%) Strand=Plus/Plus Query 165 TTTGTTCACTTGCTAATGCGTACATATTGAGTACAGAAT-ACAT-TATAAACTTGTGTAC 222 || |||||||||| | ||||||||||||||||||||||| ||| ||| | |||||| Sbjct 144 TTCGTTCACTTGCCATTGCGTACATATTGAGTACAGAATGACAGCTATCGGAT-GTGTAC 202 Query 223 AGGATATAAAGCATTGGCACTGAGTGACACCAAACTACGAGGCCTATACGGAAAACCCTA 282 |||| ||| | | |||| || || || |||||||| || | || |||| || ||||| Sbjct 203 AGGAAATATAACGATGGCCCTCAGCGATACCAAACTGCGCAGTATAAACGGCAAGCCCTA 262 Query 283 CTCTGGCCCTGCTGAAATCACCGATGGTGACGGGTTAAGTGTGCGGATTACTCCAGCAGG 342 | ||||| || || | ||||| | ||| || | || | ||| ||||| || || Sbjct 263 CAGCGGCCCGGCAGAGGTGACCGACGCTGATGGCCTGAGCGCGCGCATTACGCCTAATGG 322 Query 343 AACTATCACGTTTCAGTACCGTTATCGCTGGAATGGTAAGCCAGTACGTCTTACTGTCGG 402 || ||| | |||||||| || ||||||||| | |||||| ||||| | || | || Sbjct 323 TACCATCGC-TTTCAGTATCGCTATCGCTGGCAAA-TAAGCCTGTACGCATCACGCTTGG 380 Query 403 GCGCTATCCGTCCACTTCACTGAAGGACGCACGTGTTATCGTCGGTGAGATGCGCGCATT 462 |||||||| | | || || || || || || || ||||| || ||||| |||| Sbjct 381 CCGCTATCCTGCGATGTCTCTCAAAGAGGCGCGCGTAGCGGTCGGCGAAATGCGGACATT 440 Query 463 GTACATGAAGGGAGTTAACCCTAAAAATTATTTTGCCCCCAGTGATGGCGAATTGACATT 522 ||||||| ||| ||||||| |||| |||||| | | ||| || ||| |||| | Sbjct 441 GTACATGCTGGG--TTAACCCCAAAACTTATTTGGTCGGCAGCAGCGGGGAACTGACGCT 498 Query 523 AAAAGAATGCCTGGATCAGTGGTGGGATAAGTATGTTAGCGGCCTGAAACCCAATACTCA 582 | |||| ||||| ||| |||||||| | ||||| |||| ||| || ||| || || | Sbjct 499 ACAAGACTGCCTCGATGAGTGGTGGAACAAGTACGTTACCGGGCTAAAAGAAAACACACG 558 Query 583 GACGCTTTATAGATCTGTTGTGTACAACACTATGTACACACAGTTTGAAGACTCGCCAGT 642 | || || | || |||||||||||||| ||||||||||| ||| | || ||| || Sbjct 559 CATTCTGTACAAGTCAGTTGTGTACAACACCATGTACACACAATTTAAGGATGTGCCGGT 618 Query 643 TGCCGGTATCCCTGTATCGGCTTGGGCTCGCTTTTTTGACAAGCAAGAA-AGCCTCAACA 701 || || |||| ||| |||| | ||||| |||||||| ||| || | ||||| Sbjct 619 AGCAAACATAACTGTGTCGCTCTGGGTGCAATTTTTCGACAAGCAGGAACAGGC-CAACA 677 Query 702 AGAAAAAGGCTCGTGTTCTGTTGTTACAACTGCGTTCAGTTATTAACTGGTGTATCAGCC 761 |||| || || | || ||| || | ||||| || |||| | | |||||| ||||||| Sbjct 678 AGAAGAAAGCCAGGGTACTGCTGCTGCAACTCCGATCAGCCAGGA-CTGGTGCATCAGCC 736 Query 762 GCCAGTTAATCCCATCATGCGAATTACTCAAACTTAGTGTAAAGAATATTGGGAAGAAAC 821 ||||| | || || ||||| ||| | |||||||| || || || ||||| ||||| |||| Sbjct 737 GCCAGCTTATTCCGTCATGTGAAGTGCTCAAACTCAGCGTTAAAAATATCGGGAA-AAAC 795 Query 822 CAGATGTGGG-GAGTCGCGTACTTACCTATACGGAACTGGCAAAGATCTGGCTGACACTG 880 | ||| || ||| ||||| || ||||||| |||||||| || ||||||||| | ||| Sbjct 796 CTGATACCGGTGAG-CGCGTTCTCACCTATAACGAACTGGCGAAAATCTGGCTGGCGCTG 854 Query 881 GAGAACTCAAAAGTGGTTACTTCCAACAAGCTGTTACATCAATTGCTATTGCTATGGGGG 940 || ||| ||||| || | || || || | | || ||| |||| ||| | |||||| Sbjct 855 GAAAACAATAAAGTCTTTTCCTCTAATAAAATCCTTCACCAAATGCTGTTGTTGTGGGGG 914 Query 941 GCCAGGCTTTCTGAGCTACGTCTCGCTACAGCCAG-TGAGTTCAACATGGAAGATCTGGT 999 ||| | ||||| || || || || ||| || | ||| ||||||||||| ||||| | Sbjct 915 GCCCGCCTTTCAGAACTGCGGCTGTCTAACCCCTGCTGAATTCAACATGGATGATCTTAT 974 Query 1000 CTGGACAACCCCTAAAGAGCATTCAAAGATGGGTAATATTATCCGGCGTCCGATATTTAC 1059 |||||| || || ||||||||||||||||||||| |||||| |||| || || || Sbjct 975 CTGGACGACGCCAGCAGAGCATTCAAAGATGGGTAACATTATCAGGCGGCCTATTTTCGA 1034 Query 1060 TCAGGTTGAGCCTTATATTGAGCGATTGCTTAATATCGGATTTGATGTGCTGTTCCCTGG 1119 ||| | |||| ||| |||| | |||| || | | | || |||| || || Sbjct 1035 ACAGATACAGCCGTATGTTGAAAGGCTGCTCGCAAT-GAAAATCCGGTTATGTTTCCCGG 1093 Query 1120 GCAGGAAATAGATAAACCTATTGACCGTTCGTC-TGCTAATTTGTACATGAAAAAACTCA 1178 |||||| | || | | |||| || || || || ||| ||| |||||||| ||||| Sbjct 1094 TCAGGAACTGGACACAGCTATAGATCGCTCATCGTGC-AATCTGTACATGCGTAAACTGC 1152 Query 1179 GGGCGAAAATTGATATTCCTGAATGGAGAACGCATGATTTTAGGCGTTCTCTGGTAACGA 1238 | ||||| |||||||| |||||| | ||||||||||| |||| | |||||||||| Sbjct 1153 GAAGCAAAATCGATATTCCCGAATGGCGCACGCATGATTTCCGGCGCACCCTGGTAACGA 1212 Query 1239 ATTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTGG 1298 || | || | ||||||||| ||||||| ||||| ||||| ||||||||||||||||||| Sbjct 1213 ATCTGTCAGAGGAAGGAATATTGCCCCATGTCACCGAAAAGATGCTGGGGCATGAACTGG 1272 Query 1299 GAGGAGTGATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAG---AAAGATGCGT 1355 | || || ||||| ||||| || ||||| |||||| || || ||| |||| | | Sbjct 1273 GCGGGGTAATGGCGGTGTACAACAAACATGACTGGCTGGAAGATCAGCGTAAAGGT---T 1329 Query 1356 ATGAGTTGTATGCTGATAAAATTTTCTGGCACGCTAAACAGCTCGGTTAATTCCTCCGGA 1415 ||||| | || || ||||||||||||||||||| ||| ||| ||||||||| || || Sbjct 1330 ATGAGCTCTACGCGGATAAAATTTTCTGGCACGTTAAGCAGATCGGTTAATACCGCCTTC 1389 Query 1416 TTTAAGCCATTGTTCAACGGCCTGACGGCTATATCGCGCCGGATGA 1461 | || ||| || || || ||||| || || ||||||||| Sbjct 1390 ATCAATCCACCTTTTGACCGCTGCGCGGCTGTAACGTGCCGGATGA 1435 >seq43257 Length=1618 Score = 123 bits (136), Expect = 9e-24 Identities = 186/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 26433 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 26492 || ||||| || |||| | | | || || ||||||||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 26493 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 26552 ||||||||||||| |||||||| |||||||| || | || || ||||| ||| | | Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 26553 ATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGT 26612 | || ||||| ||||| ||||| || | || || | ||||| ||||| Sbjct 754 CTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGC 695 Query 26613 GGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAG 26672 || | ||| ||||| ||||| || || ||||||||| || || ||| ||||||||| Sbjct 694 GGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAG 635 Query 26673 GAGAGCGCGCTGGCGTGCTGGGG 26695 || | ||| | |||||||| Sbjct 634 GAATCAGAGCTCACATGCTGGGG 612 >seq47236 Length=1665 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27801 AAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGGAACAGGCGAATGCCACCATTACTGAC 27860 ||| ||||||| ||||| | | || ||| | ||| || ||||| |||| |||| Sbjct 744 AAATCGCAGCGGGATAAGGCCTCTGGCGAACTGAAGTTGGCAAACGCCACGATTAATGAC 685 Query 27861 ATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCC 27920 |||||||| || ||||| || |||||||| |||||||| ||||| | | ||||||||| Sbjct 684 ATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCGATGCGAAATATACCAAGGAGTTAGCT 625 Query 27921 GATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 27968 ||||||| |||||||||| | || || ||| | | || |||||| Sbjct 624 GATGCGAACACTGAAAATGACAGGCTTCGCGCTAAGCTGGCTGCTGGT 577 >seq44976 Length=557 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 17317 CCGGAAGACTGGAAAGACCTGTTCACTGCCCT-GTGGCTTAAGACCAAAAAACTGGAGCA 17375 || || |||||||||||||| |||||||||| || || ||||||||||| |||| Sbjct 218 CCTGACGACTGGAAAGACCTCATCACTGCCCTCGTAGCA-AAGACCAAAAACGAACAGCA 160 Query 17376 ACGAAGTGTGCCTGGTATCGACGGTGGCGTTGTCATGCTTGGCGTGCGTACCAGCAAAAT 17435 || | | || ||||||| ||| ||||| |||||| | || ||| || |||||||| Sbjct 159 GCGCACCGCACCCGGTATCGGCGGAGGCGTGGTCATGTTCGGATCGCGGACAAGCAAAAT 100 Query 17436 GC-GGAAGGCCAGCATGACTGAGCTTATCGAAATCATGTTCTGGTTCGGCTCAGAGCGCA 17494 || || | || | ||| ||| ||||||| || | |||||| ||| | |||| | Sbjct 99 GCGGGTAAGCGA-AATGGTTGAAGTTATCGAGGCAATTTACTGGTTTGGCACTGAGCAAA 41 Query 17495 ACGTG 17499 ||||| Sbjct 40 ACGTG 36 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 27869 GCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCG-- 27926 |||||||| | |||||| | | ||||| |||||| ||| ||| || ||||||||| Sbjct 430 GCGCCAGCTTTCGGTTGCTTCCATTGATGCCAAATACACGAAGGA-TTGGCCGATGCGCA 372 Query 27927 AGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATC 27986 | | | | || ||||||| ||||| | |||| |||||||||||| || Sbjct 371 AAAACCATTAGCGA---TCTGCGTAGGGATGTCGATTCTGGGGCTAAGCGCCTGCGCGTC 315 Query 27987 AACGCCACCTGC--TCCGGTACCGTGCG-TGAAGCCACCGGCACCTCCGGCGTGGATAAT 28043 |||| || || | | || || | || || ||| |||| |||||||| || Sbjct 314 TCAGCCAAATGTGTTCGGCCAGTGTCCGGTAAATCCTCCGCCACCC---GCGTGGATGAT 258 Query 28044 GCAACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGAG 28100 | | |||||||||| ||||| ||||| | ||||||||||||| |||||||||| Sbjct 257 GATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATTATTTCACCCTCAGAGAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184159406255400