Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq36998 351 9e-92 seq100260 279 5e-70 seq40328 185 8e-42 seq60383 179 3e-40 seq62438 125 7e-24 seq76547 123 2e-23 seq66202 123 2e-23 seq98424 113 4e-20 seq129722 86.0 6e-12 >seq36998 Length=1880 Score = 351 bits (388), Expect = 9e-92 Identities = 308/384 (80%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 57691 GGCGCTCCAGTCTTCCCGACCGCGGCCTGCGGCCCGCGCCAGGTTATAAACTTCACGGGA 57750 |||| ||||||| | || ||||| || ||||| |||||| || | ||||| ||||| || Sbjct 275 GGCGGTCCAGTCCTGACGTCCGCGTCCGGCGGCGCGCGCCTGGCTGTAAACCTCACGTGA 334 Query 57751 GGCGGCGCCGAGCGGCATCGGTACGTGCAGTTGATTGGCGACATCCAACGCGATGCCAAG 57810 |||||| ||||||||||| || || ||||| || || || ||||||| ||||||||| || Sbjct 335 GGCGGCCCCGAGCGGCATGGGCACATGCAGCTGGTTAGCCACATCCAGCGCGATGCCCAG 394 Query 57811 ATCTTTGTGCGCCAGATCGATCATGAAGGCGGGAGACAGATCTCCTTTCATCACTTTATT 57870 ||||| || |||||||||||||||||||| || ||||| || ||||||| ||| ||||| Sbjct 395 GTCTTTATGAGCCAGATCGATCATGAAGGCCGGTGACAGGTCGCCTTTCAGCACCTTATT 454 Query 57871 CGGCCAGGTGGTGGTGAAATGCCCTTTGCCTGCGGCAGTGCCGCTCATCACTTTTAAAGC 57930 |||||||| |||||||| ||||| || ||||| | |||||| |||| || | || || Sbjct 455 TGGCCAGGTCGTGGTGAAGTGCCCCTTCCCTGCTGGCGTGCCGTTCATGACCTGTAGCGC 514 Query 57931 CACGTCGAAGGAAAGCCCCAGCGCTTCACACAGCACGGCGGCTTCGGCGGAGAGCGCATT 57990 ||||| | | ||||||||| ||||||||||||| || || || || ||||||||||| Sbjct 515 AACGTCCAGCGGCAGCCCCAGCCCTTCACACAGCACCGCCGCCTCTGCAGAGAGCGCATT 574 Query 57991 TAGCGCAATACTCATGTAGTTGTTGATCAGTTTTACGCGAATACCCATTCCCGGGCCGCC 58050 || || |||||||||||||| || ||||| || |||||||| ||||| ||||| ||||| Sbjct 575 CAGGGCGATACTCATGTAGTTATTAATCAGCTTGACGCGAATCCCCATGCCCGGTCCGCC 634 Query 58051 GGTGTTGACCAGCTCATTACCCAT 58074 | |||| |||||| ||||| Sbjct 635 AGCCACCACCACCTCATTTCCCAT 658 >seq100260 Length=727 Score = 279 bits (308), Expect = 5e-70 Identities = 221/264 (84%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 58079 ACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACG 58138 ||||| |||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||| Sbjct 276 ACGCTGCAGCTGATCAAAGAGCACGGCTGTAAAGCCGGTCTGGTGTTCAATCCGGCAACG 335 Query 58139 CCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTG 58198 |||||||| |||||||||||||| ||||| || || || | || ||||||||||| ||| Sbjct 336 CCGCTCAGCTATCTCGATTACGTGATGGATAAGCTCGACATCATTCTGCTGATGTCGGTG 395 Query 58199 AACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTG 58258 || || ||||||||||||||||| ||||||||| || ||||||||||||||||||| | Sbjct 396 AATCCCGGCTTCGGCGGCCAGTCCTTTATTCCGGGCACACTGGATAAACTGCGCGAAGCG 455 Query 58259 CGTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAG 58318 ||||| |||||||| | ||||||| | || || ||||||||||| |||||||||||| Sbjct 456 CGTCGTCGCATTGACCAGAGCGGTTACCA-ATCCGTCTGGAAGTGGATGGCGGCGTGAAG 514 Query 58319 GTGAACAATATCGGCGAGATCGCG 58342 | | || ||||| |||||||| Sbjct 515 ATCGATAACATCGGTCAGATCGCG 538 >seq40328 Length=627 Score = 185 bits (204), Expect = 8e-42 Identities = 333/480 (69%), Gaps = 5/480 (1%) Strand=Plus/Plus Query 16168 TTCCCGTAATGCGGCGGGATGTTGAGTTTGAACGGCATGGCATCCCAATAATCGTTCACG 16227 || |||||||| | ||||| || |||||||| ||||| ||||||||| |||| || || Sbjct 33 TTTCCGTAATGAGAGGGGATATTCAGTTTGAATGGCATTGCATCCCAAAAATCATTTACA 92 Query 16228 TCCTGCTTATCGAAACTCCCCCAATGGCAAAGGGGGTACACCAGATTGAATTTCTTGGCA 16287 ||||||||||| ||| ||||| || || | || || |||| ||| || ||| | Sbjct 93 TCCTGCTTATCAAAAGAACCCCAGTGACACAATGGATATACCAAGTTGTATCGCTTAGTG 152 Query 16288 GACGCTTTGTTCGGGTTAGCCCGGTCTGGTTCGTCCGACCGCATCCCGATGGCCGTCTTT 16347 ||||| || | | || || || || ||||| | ||||| || || || || || Sbjct 153 GACGCCTTATCCATTGCTGCGCGCTCGGGCTCGTCAGCGCGCATGCCTATTGCGGTTTTG 212 Query 16348 GCGCTCCATCCCCGGCGAGCCAGTCCGTTACTGCGCATCCAGTGGCGAATCGTCTGCGTT 16407 || ||| || | | || || |||| |||||||| | || || || || Sbjct 213 GCAGACCAGCCATGCCTGGCTAGGTTGTTAGCCCGCATCCATGATCTGATTGTTTGAGTC 272 Query 16408 TTCAGGTAGTCGCTGCACTTCTGGCGGGAAATATTCGGGATGCCTTCGACACTTATCAGG 16467 || | || || ||||| ||||| ||||| | || || || |||||||||||||| || Sbjct 273 TTTAAATAATCACTGCATTTCTGACGGGATACGTTAGGTATTCCTTCGACACTTAT-AGT 331 Query 16468 CTTTCAAACGGTTCGCCGTTCCTCGCGGCCGTCTCGAAACTGACTACCCGGTGGCGCATA 16527 |||||| || ||||||||||||| || || || || |||||| ||| |||| Sbjct 332 TGTTCAAATGGCTCGCCGTTCCTCGATGCTGTTTC-AATGTGACTATTTTGTGTGACATA 390 Query 16528 CCCACGCCATGTTCCGGACTGGCGTAC-CCTTCCAGCCACACCAGATTCAGGCCGAAGTG 16586 || || || || || || || | ||| ||||| ||||| |||||||| ||||| || | Sbjct 391 CCAACACCGTGCTCGGGGCTTG-TTACGCCTTCAAGCCAAACCAGATTAAGGCCAAAAAG 449 Query 16587 CTTATCCACCTTGTCGGCGAATATCAGTGTTTCTTCGTGCTCCCGGCCAGTATTGGCGAA 16646 ||||| ||||| || || || || | ||||| || || ||||| || || || || Sbjct 450 TTTATCGACCTTATCAGC-AAAATTAAAGTTTCGGGATGTTCGCGGCCCGTGTTCGCAAA 508 >seq60383 Length=344 Score = 179 bits (198), Expect = 3e-40 Identities = 201/266 (76%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 36918 CAGCCTGCGCCGCCATCCATTCCCACGTATTTTCGTGCATGGCGCGGTGTTTCATCAGCA 36977 |||||||||||| | | |||||||| || |||||||||| || ||||| ||||| |||| Sbjct 262 CAGCCTGCGCCGTCCTGCATTCCCATGT-GTTTCGTGCATCGCACGGTGCTTCATAAGCA 204 Query 36978 GGTAAGCGATGACACGGTCGCGGCGCTGCGCGATAGACAGGGTGCCAGTACCCAACG--C 37035 |||| ||||| |||||||| |||||||| | | |||||| || ||||| ||| | Sbjct 203 GGTATGCGATAACACGGTCACGGCGCTGAGACAGAGACAGCGTACCAGT---GTACGGTC 147 Query 37036 TTCACCCGGCTGACGCGGGATGATCATGTTAGGGTCGATGACGTGTTTCGGCTTCACGTA 37095 ||| || ||||| ||||| |||| ||| || ||||| ||||| || || || ||||| Sbjct 146 TTCGCCTGGCTGCACAGGGATAATCAGGTTTGGATCGATAACGTGCTTAGGTTTAACGTA 87 Query 37096 GGCTGGTTTAAAAGTCTTCGTGTTGTAGCCGCTTTCTTTGATCACGCGGCCCTGTACGTT 37155 || || || || | ||| | | |||| ||||||||| |||||||||| ||||| Sbjct 86 AGCAGGCTTGAATCGCATCGCGGTCCAGCCTTCTTCTTTGATAACGCGGCCCTCGACGTT 27 Query 37156 CGGTGCAACGAACGGAGCAACGCGGG 37181 ||| || ||| | || || ||||||| Sbjct 26 CGGCGCCACGTAAGGTGCTACGCGGG 1 >seq62438 Length=1530 Score = 125 bits (138), Expect = 7e-24 Identities = 184/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 58085 CAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTC 58144 |||||||| || |||||||| || || || ||||| |||||||||| || ||| | Sbjct 732 CAGCTGATCAAGTCGCACGGCTGCAAGGCCGGCCTGGTGCTCAACCCGGCCACCCCGGTG 791 Query 58145 AGTTATC-TCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCC 58203 | ||| |||| | || ||||| | ||||| || | ||| ||||||| || ||||| Sbjct 792 -GACATCCTCGACTGGGTGCTGGACGACCTGGACCTGGTGCTGGTGATGTCGGTCAACCC 850 Query 58204 AGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCG 58263 ||||||||||||||| | || ||||| | ||||||| || ||||||| | || Sbjct 851 GGGCTTCGGCGGCCAGGCCTTCATTCCCTCGGCGCTGGACAAGCTGCGCGCGATCCGCGC 910 Query 58264 CCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAA 58323 |||||| || || ||| | || || ||||| | |||||||| || ||| | | Sbjct 911 CCGCATCGACGCCAGCGGCAAGCCGATCCGGCTGGAGATCGACGGCGGGGTCAAGCCGGA 970 Query 58324 CAATATCGGCGAGATCGC 58341 ||| |||| || |||||| Sbjct 971 CAACATCGCCGCGATCGC 988 >seq76547 Length=445 Score = 123 bits (136), Expect = 2e-23 Identities = 242/350 (69%), Gaps = 16/350 (5%) Strand=Plus/Plus Query 38565 CGCCAACGCATATGCCGCAGAATAGCAGTTTGAATCGACAACCGCCAGCGAAGGTTTCTC 38624 || || ||| ||||| || ||||| ||||| | ||| || ||||||| || || || || Sbjct 12 CGACAGCGCGTATGCTGCTGAATAACAGTTCGCATCCACGACCGCCATCGTTGGCTTTTC 71 Query 38625 GCCGCGTGTATCAAACATTTCCTGAGACAA-CTCGAAACAGCCCGCTGCTTCCCCGCCGT 38683 | | | | ||| || | ||| ||| ||||| || | ||| | || || | Sbjct 72 GAGGTTGGCG------AGTTC-TGCGGCAAGCTCAAAACAACCGGATGCCTGACCACCAT 124 Query 38684 TCGAGTTGACGTCGTAGATAATCGCCTCTACATCCGGGTCGGCCAGCGCTGC-ATTACG- 38741 | ||| || || | ||||| ||| ||||| ||| ||| || || | | | Sbjct 125 TACTGTTCACATCAAAAATAATACGCTCGACATCA---TCGTCCATTGCCGCCAGTGCAG 181 Query 38742 -CTGACTGCGGATAAAATTGTAGCCCGTCACGTAGCCGTAGTAATACCCGCCATAGCGGT 38800 ||||| ||||| || || || || || ||||| || | ||||| || || ||||||| Sbjct 182 CCTGACGACGGATGAAGTTATATCCGGTTACGTACCCAAAATAATAGCCACCGTAGCGGT 241 Query 38801 TAATCAGGGTGCCGTGAATCGGGATGATAGCGAGGCCGTTGGAGAAGGCGAAAGGTTTGT 38860 |||||||| | ||||||||||| ||||| ||| ||||| ||| || |||||||||| Sbjct 242 TAATCAGGCTACCGTGAATCGGAATGATGGCGGTACCGTTAACGAAAGCAAAAGGTTTGT 301 Query 38861 CCGCAGATGGTC-GGCCAACGCCATACGCTGCACACAGGTTTTCGCGCAT 38909 | ||| ||| | | ||||||||||||| | | || || ||| |||||| Sbjct 302 CTGCA-CTGGCCTGCCCAACGCCATACGTTTCGCAGAGCGTTTTGCGCAT 350 >seq66202 Length=972 Score = 123 bits (136), Expect = 2e-23 Identities = 201/286 (70%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 119237 ATCTTTGGGGGAACTATTAACTCTAAAGGGTTTAAGGTACTGGATGAGCACATTGGCCTT 119296 |||||||| || ||||||||||||| | ||||| || ||| ||| |||| | Sbjct 656 ATCTTTGGTGGTGAAGTTAACTCTAAAGGTTACAAGGTTCTTGATACACACGTTGGTGTA 715 Query 119297 ATCTATGGTGACTCTATCACGCTGGAACGTGCAAACGAAATCCTGAAGCGTCTGTATGAA 119356 ||||||||||| || ||||| ||| |||| || | |||||| | | || || | | Sbjct 716 ATCTATGGTGATTCAATCACTCTGAAACGCGCCACTGAAATCTTTGAACGCTTGGAAGCT 775 Query 119357 ATGGGTTTTGCAAGCTCTAACGTAGTGTTTGGTGTAGGTTCTTACACTTACCAGTACATG 119416 | ||||||||| ||| | || || ||| | ||| || |||||| | |||| Sbjct 776 AAAGGTTTTGCATCAAGTAATATTGTATTCGGTATTGGTAGCTATACTTACAACTACAAT 835 Query 119417 ACTCGTGACACCTTTGCATTTGC-TGTAAAAGCAACTCTTGCAAGCATTGGTGGTAAAGA 119475 || ||||||||||||| ||||| ||| ||||||||| | ||| ||||| |||| |||| Sbjct 836 ACACGTGACACCTTTGGTTTTGCATGT-AAAGCAACTGGTTCAATCATTGATGGTGAAGA 894 Query 119476 GATTATGCTTGCAAAAGACCCTAAAACAGATAGTGGTGTTAAGAAA 119521 ||| || | ||||| || ||||| || |||||||||| Sbjct 895 GATCCTGGTGAGTAAAGAGCC-AAAAC------TGATGTTAAGAAA 933 >seq98424 Length=301 Score = 113 bits (124), Expect = 4e-20 Identities = 204/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 2679 TTCGCAGGCGGCTTCATCGAGTGGATAGATCCGGTGTACGGCGTGGAACGTCGCGGCATC 2738 ||| | ||||| |||||||| |||||||||||| | ||| |||||||||| ||| Sbjct 3 TTCACGGGCGGTTTCATCGAATGGATAGATCCGCAGCGCGGTACTGAACGTCGCGCCATT 62 Query 2739 GAAACCCATACCGGGAATACCATTACCATCTTTGGTACCGTAGACGGCTTGGCCGGGGGC 2798 || || || |||| || || | | || || || ||| ||||||| ||| Sbjct 63 GAGACGCACACCGACAACACGCTGGTGTT-TTCGGCGTGGTCAGCGGACTGGCCGGTGGC 121 Query 2799 TACATCCTCAAGACTTACCCGGGATGCCCGCGCAC--CAGTACGGCCTGTGATACCATCT 2856 || | ||| ||| || || ||||||||||| ||| | || || | | | Sbjct 122 ATGGTCATTAAGGTTTATCCTGGTTGCCCGCGCACGTCAG--CTGCGTGCCAGAGTCGTT 179 Query 2857 TCAACAATCTGGCGAACTTCGGCGGAATCCCGTCGCTGCCAGACCGTTCCCCGTTCGACG 2916 | ||||| |||| || | ||||| ||| || |||| |||||| ||||| |||| Sbjct 180 TTAACAACCTGGACAATTATGGCGGCATCATCTCAATGCCGTCCCGTTCGCCGTTTGACG 239 Query 2917 GCAACCCAATCTTTTAAGGAGAATCGCTATGTGGTGGGCGTTAGCTATGCTGGT 2970 |||| ||| |||| ||||| ||| |||||||||||||| ||||| |||||||| Sbjct 240 GCAATCCAGTCTTCTAAGGGGAAA-GCTATGTGGTGGGCATTAGCCATGCTGGT 292 >seq129722 Length=886 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33626 GAAGGTGAAGGACATGACCTGCCAGTCGTCGCCTTTCAGTGCATAATCGCCGTCCGGCGC 33685 ||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| |||||| Sbjct 96 GAACGTGAACGACATAACCTGCCAGTCATCACCCTTCAGCGCATAGTCGCCATCCGGCTG 37 Query 33686 GATGGACACTTTCGGGAAGTAGTAGTTCTT 33715 | | ||||||||||||| |||||| ||| Sbjct 36 CAGCGCCACTTTCGGGAAGAAGTAGTCCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470474065244000