Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027993.1 Length=43587 Score E Sequences producing significant alignments: (Bits) Value seq30007 297 5e-76 seq74461 246 8e-61 seq38429 190 6e-44 seq70435 122 2e-23 >seq30007 Length=31646 Score = 297 bits (328), Expect = 5e-76 Identities = 366/495 (74%), Gaps = 4/495 (1%) Strand=Plus/Minus Query 26920 GCGCCAAAGAAGAGTCGTTCTCTTTTGTGCGGTGCGCCGACGCTACAAGCTGGGAGTACA 26979 || |||||||| ||||| |||||||||||||| |||||||||||||| ||||| | ||| Sbjct 2908 GCACCAAAGAAAAGTCGATCTCTTTTGTGCGGGGCGCCGACGCTACACGCTGGCAATACT 2849 Query 26980 GCAAACCCGACGGCGTAGTCTTCTCCTTCCAGGTGAGCTTGTAAATCGCACATCCACGAT 27039 || |||| |||||| |||||| ||||| | ||| |||||| | ||| | Sbjct 2848 GCCGCCCCGCAGGCGTAACCTTCTCTTTCCAACTCAGCGAATAAATCATCGAGCCAGTGT 2789 Query 27040 TTTGCAATTGCTGCCGCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACT-CGCTGAT 27098 ||| |||||||||||||||||||||| ||||| | ||||||||||||||||| ||| || Sbjct 2788 TTTCCAATTGCTGCCGCAACCTGCTCGCCAAAAAGGACTGGAGGGCGGCACTGCGC-GAC 2730 Query 27099 GAGGTCGAGGAAGACCGGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGCTTTCCCGC 27158 ||| | ||| ||||||||||||| | ||| | ||||||||| ||||| || || Sbjct 2729 GAGACGCATAAAGGTGGGCGCGAGGTGTCGCTCGTCAAGCTGTCCGAGCTGCTTCCCGGC 2670 Query 27159 CGCGCTAAACGGTTGGCAAGGCGGGCTTCCCGTCCAGAGAGGCGCATCTTCCGGAACTCC 27218 |||| || || |||||||| || ||||| |||||||| ||| | |||| | ||| Sbjct 2669 GACGCTGAAAGGCTGGCAAGGTGGACTTCCGGTCCAGAGCCGCGTTGTTGCCGGGATTCC 2610 Query 27219 CGCAAGTCTG-AGCGCGAGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTGGGTGA 27277 ||||| ||| || ||| | ||| |||||||| || ||||| || ||||| || || | Sbjct 2609 GGCAAG-CTGCAGTGCGTAACTCCATCCGCCGATGCCGGCGAAGAAGTGACATTGTGTAA 2551 Query 27278 ACCCGTCAAGGTCTTCTGGCTTAACTTCGGTAATGCTTCTTTCATCTACAACTCCAAAAG 27337 | || || || ||| || | ||||| || || || ||||| ||| || | Sbjct 2550 ATCCTTCCAGATCTGAAGGGGTGACTTCTGTGATTGATCGCTCATCGACATAACCGTTCG 2491 Query 27338 GTATGTGACCCTGTTTTATCAACTCACGCAGCCACGCGGCTGCGCCTTTATCCCATTCAT 27397 | || ||| || || || || |||||||| || ||||| |||||||||||||| | Sbjct 2490 GGATTAATCCCGCCTTAATTAATTCCCGCAGCCATGCCGCTGCACCTTTATCCCATTCGT 2431 Query 27398 TGTAATAGTTCATTT 27412 |||||||||||| || Sbjct 2430 TGTAATAGTTCACTT 2416 Score = 251 bits (278), Expect = 2e-62 Identities = 163/179 (91%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 26613 CTTTATAAATTCGGCGGCTACTTGCGGGACGATGGCATTGCCGTAACCGCGCAATCGTCC 26672 |||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 3392 CTTTATGAATTCTGCGGCGACTTGCGGGACGATGGCATTGCCATAACCGCGCAATCGTCC 3333 Query 26673 CACTCTTGCGGGTATCCCATTAGCCAGCGGGAATGCGCCGGGTTCAACCGGCCGGAACTT 26732 |||||| ||||| ||||||| |||||||||||||| |||||||||||| ||||| ||||| Sbjct 3332 CACTCTGGCGGGAATCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGTAACTT 3273 Query 26733 TCCATCACGGCATCCGAGCCAGTCAGCATCTGACCAGAAGCCGTGGTGCGGGTTGGTTG 26791 |||||| ||||||||||||||||||||||||||||||||||| || ||||| | || || Sbjct 3272 TCCATCCCGGCATCCGAGCCAGTCAGCATCTGACCAGAAGCCTTGATGCGGATCGGCTG 3214 >seq74461 Length=772 Score = 246 bits (272), Expect = 8e-61 Identities = 343/476 (72%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 26938 TCTCTTTTGTGCGGTGCGCCGACGCTACAAGCTGGGAGTACAGCAAACCCGACGGCGTAG 26997 |||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 770 TCTCTTTTGTGCGGGGCACCGACGCTACAAGCTGGAAGTACGGCAAACCCGCTGGCGTAG 711 Query 26998 TCTTCTCCTTCCAGGTGAGCTTGTAAATCGCACATCCA---CGATTTTGCAATTGCTGCC 27054 ||||| | |||| | | ||||| || ||| ||| | ||||||||| Sbjct 710 CCTTCTTCCGCCAGTTCAATGAGTAAAGCGTCGGCCCATTGGTCTTTGGTAATTGCTGCT 651 Query 27055 GCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACTCGCTGATGAGGTCGAGGAAGACC 27114 |||||||||||||||||||| | | |||| |||||||| |||||| ||| | ||| || Sbjct 650 GCAACCTGCTCCCCAAAGATAAGTTGAGGTCGGCACTCTGCGATGAGTTCGGGAAAGGCC 591 Query 27115 GGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGCTTTCCCGCCGCGCTAAACGGTTGG 27174 || || ||||| | |||| || | || || ||| ||| | || || || ||| Sbjct 590 GGAGCCAGGTGACGTACGTCG--CTTCCTGA---CCTGTCCAGCCACACTGAAAGGCTGG 536 Query 27175 CAAGGCGGGCTTCCCGTCCAGAGAGGCGCATCTTCCGGAACTCCCGCAAGTCTGAGCGCG 27234 || ||||| || |||||||| || || || | | ||||| || || ||| ||||| Sbjct 535 CACGGCGGACTGCCCGTCCACAGCGGGACA-GTGCGGGAACGCCAGCGAGTTGTAGCGCA 477 Query 27235 AGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTGGGTGAACCCGTCAAGGTCTTCT 27294 || ||||||||| || || ||| |||||||| ||||| || ||| | ||||| Sbjct 476 CGACTCCAGCCGCCAATGCCACAGAAGAAATGACATTGGGT-AAACCGGCGAGGTCGGAA 418 Query 27295 GGCTTAACTTCGGTAATGCTTCTTTCATCTACAACTCCAAAAGGTATGTGACCCTGTTTT 27354 || |||||||||| || || |||||||||| || || ||||||||| || Sbjct 417 GGTGTAACTTCGGTGATAGATCGATCATCTACAATACCCTGCGGGATGTGACCCGCCTTA 358 Query 27355 ATCAACTCACGCAGCCACGCGGCTGCGCCTTTATCCCATTCATTGTAATAGTTCAT 27410 || || ||||| ||||| ||||| || || ||||| || |||||||| ||||| Sbjct 357 ATTAATTCACGGAGCCAAGCGGCAGCCCCGGCGTCCCACTCGTTGTAATAATTCAT 302 >seq38429 Length=1166 Score = 190 bits (210), Expect = 6e-44 Identities = 125/138 (91%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 26615 TTATAAATTCGGCGGCTACTTGCGGGACGATGGCATTGCCGTAACCGCGCAATCGTCCCA 26674 |||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 138 TTATGAATTCTGCGGCAACTTGCGGGACGATGGCATTGCCGTAACCGCGCAGTCGTCCCA 79 Query 26675 CTCTTGCGGGTATCCCATTAGCCAGCGGGAATGCGCCGGGTTCAACCGGCCGGAACTTTC 26734 |||| ||||| ||||||| ||||| |||||||| ||||| |||||| ||||||||||||| Sbjct 78 CTCTGGCGGGAATCCCATGAGCCAACGGGAATGTGCCGGATTCAACTGGCCGGAACTTTC 19 Query 26735 CATCACGGCATCCGAGCC 26752 |||| ||||| ||||||| Sbjct 18 CATCCCGGCAGCCGAGCC 1 >seq70435 Length=537 Score = 122 bits (134), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 3/341 (1%) Strand=Plus/Minus Query 15923 AAACTCCGTATGGCCTCAATCAGGCGGTAGAGGGGTTTACCAAGCTCGTGGCGCTAGGTC 15982 |||| ||||| |||| | ||||| || || || || | |||||| ||| || || | Sbjct 471 AAACGCCGTACAGCCTGGAGCAGGCCGTTGAAGGCTTCAGCAAGCTGGTGAACCTCGGCC 412 Query 15983 TTAACCCCAGCAAAGA-GGCGTTAATATCCTACGGCAACACCGCCGCAGCTATGGGCAAA 16041 | | | ||| | ||| ||| | | ||||||||||||||||||||||| ||||| ||| Sbjct 411 TGA-CGCCATCCGAGAAGGCTCTGACCTCCTACGGCAACACCGCCGCAGC-ATGGGGAAA 354 Query 16042 GACCTTAACCAAATGATTGAGGCAGTTGCCGACGCCAGTACATTTGAATTTGAGCGCTTA 16101 ||||| || || ||||| ||||| || |||| || || || || |||||| | Sbjct 353 GACCTCAATCAGATGATCGAGGCCGTGTCCGATGCTGCCACCGGCGAGTTCGAGCGCCTG 294 Query 16102 AAAGAGTTCGGTATCAAGTCTTCCCAACAGGCGGATACAGTTTCGTTTACGTTCCGTGGC 16161 || || ||||| |||| ||| ||| |||| || | || || | || ||||||||| Sbjct 293 AAGGAATTCGGCATCACGTCGAGCCAGCAGGGCGACAAGGTGTCCCTGACCTTCCGTGGC 234 Query 16162 GTAACGACCACGGTTAAAAAGAACTCCGAAGAGATTCAGAAATACCTGCTAAATATCGGT 16221 || || || || | |||| | || | |||||| || ||||| | || | || Sbjct 233 GTCACCACGACCATCGGGAAGAGCGCCAAGGAGATTGAGGGCTACCTCATGAACCTGGGC 174 Query 16222 AACACTGATTTCGCCGGAGCGATGGAGACGCGCTCGAAGAC 16262 ||||||||||| || ||||| |||| | ||||| Sbjct 173 CTGGTCGATTTCGCCGGCGCCATGGATCAGCGCGCAAAGAC 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139141171481400