Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027994.1 Length=41632 Score E Sequences producing significant alignments: (Bits) Value seq30007 297 5e-76 seq74461 246 8e-61 seq38429 196 1e-45 >seq30007 Length=31646 Score = 297 bits (328), Expect = 5e-76 Identities = 366/495 (74%), Gaps = 4/495 (1%) Strand=Plus/Minus Query 25306 GCGCCAAAGAAGAGTCGTTCTCTTTTGTGCGGTGCGCCGACGCTACAAGCTGGGAGTACA 25365 || |||||||| ||||| |||||||||||||| |||||||||||||| ||||| | ||| Sbjct 2908 GCACCAAAGAAAAGTCGATCTCTTTTGTGCGGGGCGCCGACGCTACACGCTGGCAATACT 2849 Query 25366 GCAAACCCGACGGCGTAGTCTTCTCCTTCCAGGTGAGCTTGTAAATCGCACATCCACGAT 25425 || |||| |||||| |||||| ||||| | ||| |||||| | ||| | Sbjct 2848 GCCGCCCCGCAGGCGTAACCTTCTCTTTCCAACTCAGCGAATAAATCATCGAGCCAGTGT 2789 Query 25426 TTTGCAATTGCTGCCGCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACT-CGCTGAT 25484 ||| |||||||||||||||||||||| ||||| | ||||||||||||||||| ||| || Sbjct 2788 TTTCCAATTGCTGCCGCAACCTGCTCGCCAAAAAGGACTGGAGGGCGGCACTGCGC-GAC 2730 Query 25485 GAGGTCGAGGAAGACCGGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGCTTTCCCGC 25544 ||| | ||| ||||||||||||| | ||| | ||||||||| ||||| || || Sbjct 2729 GAGACGCATAAAGGTGGGCGCGAGGTGTCGCTCGTCAAGCTGTCCGAGCTGCTTCCCGGC 2670 Query 25545 CGCGCTAAACGGTTGGCAAGGCGGGCTTCCCGTCCAGAGAGGCGCATCTTCCGGAACTCC 25604 |||| || || |||||||| || ||||| |||||||| ||| | |||| | ||| Sbjct 2669 GACGCTGAAAGGCTGGCAAGGTGGACTTCCGGTCCAGAGCCGCGTTGTTGCCGGGATTCC 2610 Query 25605 CGCAAGTCTG-AGCGCGAGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTGGGTGA 25663 ||||| ||| || ||| | ||| |||||||| || ||||| || ||||| || || | Sbjct 2609 GGCAAG-CTGCAGTGCGTAACTCCATCCGCCGATGCCGGCGAAGAAGTGACATTGTGTAA 2551 Query 25664 ACCCGTCAAGGTCTTCTGGCTTAACTTCGGTAATGCTTCTTTCATCTACAACTCCAAAAG 25723 | || || || ||| || | ||||| || || || ||||| ||| || | Sbjct 2550 ATCCTTCCAGATCTGAAGGGGTGACTTCTGTGATTGATCGCTCATCGACATAACCGTTCG 2491 Query 25724 GTATGTGACCCTGTTTTATCAACTCACGCAGCCACGCGGCTGCGCCTTTATCCCATTCAT 25783 | || ||| || || || || |||||||| || ||||| |||||||||||||| | Sbjct 2490 GGATTAATCCCGCCTTAATTAATTCCCGCAGCCATGCCGCTGCACCTTTATCCCATTCGT 2431 Query 25784 TGTAATAGTTCATTT 25798 |||||||||||| || Sbjct 2430 TGTAATAGTTCACTT 2416 Score = 255 bits (282), Expect = 2e-63 Identities = 164/179 (92%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24999 CTTTATAAATTCGGCGGCTACTTGCGGGACGATGGCATTGCCGTAACCGCGCAATCGTCC 25058 |||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 3392 CTTTATGAATTCTGCGGCGACTTGCGGGACGATGGCATTGCCATAACCGCGCAATCGTCC 3333 Query 25059 CACTCTGGCGGGTATCCCATTAGCCAGCGGGAATGCGCCGGGTTCAACCGGCCGGAACTT 25118 |||||||||||| ||||||| |||||||||||||| |||||||||||| ||||| ||||| Sbjct 3332 CACTCTGGCGGGAATCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGTAACTT 3273 Query 25119 TCCATCACGGCATCCGAGCCAGTCAGCATCTGACCAGAAGCCGTGGTGCGGGTTGGTTG 25177 |||||| ||||||||||||||||||||||||||||||||||| || ||||| | || || Sbjct 3272 TCCATCCCGGCATCCGAGCCAGTCAGCATCTGACCAGAAGCCTTGATGCGGATCGGCTG 3214 >seq74461 Length=772 Score = 246 bits (272), Expect = 8e-61 Identities = 343/476 (72%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 25324 TCTCTTTTGTGCGGTGCGCCGACGCTACAAGCTGGGAGTACAGCAAACCCGACGGCGTAG 25383 |||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 770 TCTCTTTTGTGCGGGGCACCGACGCTACAAGCTGGAAGTACGGCAAACCCGCTGGCGTAG 711 Query 25384 TCTTCTCCTTCCAGGTGAGCTTGTAAATCGCACATCCA---CGATTTTGCAATTGCTGCC 25440 ||||| | |||| | | ||||| || ||| ||| | ||||||||| Sbjct 710 CCTTCTTCCGCCAGTTCAATGAGTAAAGCGTCGGCCCATTGGTCTTTGGTAATTGCTGCT 651 Query 25441 GCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACTCGCTGATGAGGTCGAGGAAGACC 25500 |||||||||||||||||||| | | |||| |||||||| |||||| ||| | ||| || Sbjct 650 GCAACCTGCTCCCCAAAGATAAGTTGAGGTCGGCACTCTGCGATGAGTTCGGGAAAGGCC 591 Query 25501 GGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGCTTTCCCGCCGCGCTAAACGGTTGG 25560 || || ||||| | |||| || | || || ||| ||| | || || || ||| Sbjct 590 GGAGCCAGGTGACGTACGTCG--CTTCCTGA---CCTGTCCAGCCACACTGAAAGGCTGG 536 Query 25561 CAAGGCGGGCTTCCCGTCCAGAGAGGCGCATCTTCCGGAACTCCCGCAAGTCTGAGCGCG 25620 || ||||| || |||||||| || || || | | ||||| || || ||| ||||| Sbjct 535 CACGGCGGACTGCCCGTCCACAGCGGGACA-GTGCGGGAACGCCAGCGAGTTGTAGCGCA 477 Query 25621 AGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTGGGTGAACCCGTCAAGGTCTTCT 25680 || ||||||||| || || ||| |||||||| ||||| || ||| | ||||| Sbjct 476 CGACTCCAGCCGCCAATGCCACAGAAGAAATGACATTGGGT-AAACCGGCGAGGTCGGAA 418 Query 25681 GGCTTAACTTCGGTAATGCTTCTTTCATCTACAACTCCAAAAGGTATGTGACCCTGTTTT 25740 || |||||||||| || || |||||||||| || || ||||||||| || Sbjct 417 GGTGTAACTTCGGTGATAGATCGATCATCTACAATACCCTGCGGGATGTGACCCGCCTTA 358 Query 25741 ATCAACTCACGCAGCCACGCGGCTGCGCCTTTATCCCATTCATTGTAATAGTTCAT 25796 || || ||||| ||||| ||||| || || ||||| || |||||||| ||||| Sbjct 357 ATTAATTCACGGAGCCAAGCGGCAGCCCCGGCGTCCCACTCGTTGTAATAATTCAT 302 >seq38429 Length=1166 Score = 196 bits (216), Expect = 1e-45 Identities = 126/138 (91%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 25001 TTATAAATTCGGCGGCTACTTGCGGGACGATGGCATTGCCGTAACCGCGCAATCGTCCCA 25060 |||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 138 TTATGAATTCTGCGGCAACTTGCGGGACGATGGCATTGCCGTAACCGCGCAGTCGTCCCA 79 Query 25061 CTCTGGCGGGTATCCCATTAGCCAGCGGGAATGCGCCGGGTTCAACCGGCCGGAACTTTC 25120 |||||||||| ||||||| ||||| |||||||| ||||| |||||| ||||||||||||| Sbjct 78 CTCTGGCGGGAATCCCATGAGCCAACGGGAATGTGCCGGATTCAACTGGCCGGAACTTTC 19 Query 25121 CATCACGGCATCCGAGCC 25138 |||| ||||| ||||||| Sbjct 18 CATCCCGGCAGCCGAGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132894851468400