Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq105218 434 3e-117 seq69190 423 5e-114 seq37600 152 1e-32 seq83571 140 9e-29 seq29027 129 2e-25 seq75476 114 3e-21 seq16638 98.7 3e-16 seq27043 96.9 9e-16 >seq105218 Length=700 Score = 434 bits (480), Expect = 3e-117 Identities = 386/477 (81%), Gaps = 7/477 (1%) Strand=Plus/Plus Query 16522 AGGCTTCCAGCGCTTCCGCCGTCGCTGCGTACAGGTCCAGCAGCGTGCTGCGGTTCATTG 16581 ||| |||||||||||| | || || ||||| | ||||||||||| ||||||||||| Sbjct 1 AGGTTTCCAGCGCTTCAACGGTGGCAGCGTAAATATCCAGCAGCGTTTCGCGGTTCATTG 60 Query 16582 GTGCATCAACCAGGTACGGCAACCGGCTGCCGTAGTCGCGGCGCATCACTCTCGTGCCAA 16641 | || || |||||| | |||| |||||||| ||||||||||||||||||| |||||| Sbjct 61 GCGCGTCCACCAGGGAGGGCAGTCGGCTGCCATAGTCGCGGCGCATCACTCGCGTGCCGG 120 Query 16642 TTGGCGTCGTGAGTATGTCACGTATGGATTGGCGCAGATGGTCCAGGCCATCCAGCGGCG 16701 ||||||| ||||||||||| ||||| || |||||||||||||| | |||||||||||||| Sbjct 121 TTGGCGTAGTGAGTATGTCGCGTATTGACTGGCGCAGATGGTCGATGCCATCCAGCGGCG 180 Query 16702 CGCCTGTTGCCGCGTTTGTTCCTTTCATGCGGGCAATGATGCCCGCAT-GGCCAGT--GT 16758 ||||||||||||| || || |||||||||||||||||||||||||||| || || | Sbjct 181 CGCCTGTTGCCGCATTCGTACCTTTCATGCGGGCAATGATGCCCGCATCGGGTGGTCGGG 240 Query 16759 TTTATC--TTCTTGGGGTTTGTCAGGTCAGACAGGTG-CGCCGGTGTTGCTTCCGCCAGA 16815 ||||| | ||||||| ||||||| | ||||||||| | || ||||| ||||||||| Sbjct 241 CTTATCCTTGCTTGGGGGTTGTCAGATTAGACAGGTGCCTGCGTCGTTGC-TCCGCCAGA 299 Query 16816 CTGCACGCCGCTGTGGCTGTGGTCACTGCCAACGTTTTTGCCGTTGTGGGTCAGGCTTGG 16875 ||| || |||||||| ||| ||||||| ||||||||||||||| |||||||| Sbjct 300 CTGAACACCGCTGTGCAGGTGCGTGCTGCCAATGTTTTTGCCGTTGTGCGTCAGGCTACC 359 Query 16876 CCCCTCGATGGAAACCGCGCCTTTCATGGTCGCGCTGCCGCCCTCCTGGCCCATCGTCAG 16935 || || |||| || |||||||||||| ||||||||||| |||||||||||||| | Sbjct 360 GCCTTCAATGGCCACATTGCCTTTCATGGTGGCGCTGCCGCCTTCCTGGCCCATCGTGAA 419 Query 16936 GCTTTTGGCCACGGTCAGGTTTCCGGTGCAAAACGTGTCAGGCGTGTCCATGGTGAC 16992 |||| |||||||||||||| || ||| | || ||||| ||||| |||||||| Sbjct 420 ACTTTGCGCCACGGTCAGGTTGCCAGTGACCATTGTTTCAGGTGTGTCAATGGTGAC 476 >seq69190 Length=479 Score = 423 bits (468), Expect = 5e-114 Identities = 388/482 (80%), Gaps = 10/482 (2%) Strand=Plus/Minus Query 20891 CGTTCCAGCATTTCCAGAACCTGCGTGATTTTGCCTTTCTCGTCTACCATCGCGCGCACC 20950 |||||||||| ||||||||| | ||||| || || | ||||| || ||||||||| Sbjct 479 CGTTCCAGCACTTCCAGAACTTTGGTGATGTTACCGCTTTCGTCAACTTCGGCGCGCACC 420 Query 20951 AGATTACCGGCAGCGTCGCGCAGAGTTTT--TTCTAACATT-CGTGAATCCTCA--AATG 21005 || ||||| | || || |||| | || | | | ||| || ||||||| || Sbjct 419 AGGTTACCTGATGCATCACGCAAAACCTTAATATTCATATTTCGATTATCCTCAGAAACA 360 Query 21006 Att-tttttGGTGCTGGAACCTCTACGGTGCCCGCAGTATCGGATTT-GCTGCCGCGTTG 21063 || |||||||||| ||||| |||| ||||| |||||||||| ||| ||| |||||||| Sbjct 359 ATAATTTTTGGTGCCGGAACGTCTAATGTGCCAGCAGTATCGGGTTTAGCT-CCGCGTTG 301 Query 21064 TTCTTCTTGGGGTTTGTCAAACGCACGCCCAATGCCAACGCTGGTGTCAGCGGGAACGCT 21123 |||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||| Sbjct 300 TTCTTCTTGGGGGTTGTCAAGATGACGCCCAATGCCAACGCTGCTGTCAGCCGGAACGCT 241 Query 21124 CACAATTGAAATTTCGAACGGTTCCCATTCAGTGATGCGGTAGACATCCTGCCACTCGTC 21183 ||| || ||||||||| | |||||||| ||||| || ||||| || |||||||| ||||| Sbjct 240 CACGATGGAAATTTCGTAAGGTTCCCAATCAGTAATCCGGTAAACGTCCTGCCATTCGTC 181 Query 21184 ACGCGTTTCCTGTAGCTTGGCCGCTAACACGCGGTAGCCAACGGAAACATGCTTGCGAAT 21243 |||||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 180 GCGCGTTTCAGTCAGTTTGGCCGCTAACACGCGGTAACCAACAGAAACGTGCTTCCGAAT 121 Query 21244 GCCGTCAACGATGTCCTGGAAAATCTCGTCAGCGCGCGCACTTCTGCCAAAGCGCACCAC 21303 |||||||||||||| | ||||||||| || || ||||| ||||| |||||||||||||| Sbjct 120 TCCGTCAACGATGTCGTTGAAAATCTCATCGGCACGCGCGCTTCTTCCAAAGCGCACCAC 61 Query 21304 AGCCCGCCCCCGGCGGTCAGCGTCAATGCTGACGGATTCAACAACGCCCACCTGGTCAGT 21363 |||| |||||||| || ||||| ||| | |||||||||| ||||| ||||||||||| Sbjct 60 AGCC--GCCCCGGCGATCTGCGTCGATGGTCACGGATTCAATGACGCCAACCTGGTCAGT 3 Query 21364 CC 21365 || Sbjct 2 CC 1 >seq37600 Length=3447 Score = 152 bits (168), Expect = 1e-32 Identities = 242/339 (71%), Gaps = 11/339 (3%) Strand=Plus/Plus Query 2563 GCGCTTCACCTTCCTGGCTATCTCGTCATTGGT--CCAGCCCTGCGCTTTCAGGCGCGCA 2620 |||||| |||||| | |||||||| | ||| ||| ||||| ||| ||| | Sbjct 3115 GCGCTTAACCTTCTTCGCTATCTCTGCC--GGTTCCCAACCCTGATTAACCAGACGCTGA 3172 Query 2621 TAGGCTTTGGCGCGTTCCAGCGGTTCCAGTGGCTTGCCCTGGCTGCTGGTGACCATCAGC 2680 |||||| ||| || |||||||| | | | |||| |||||||| || ||||| | Sbjct 3173 TAGGCTGCGGCACGCTCCAGCGGGAGTAACGCCCTGCCTTGGCTGCTTGTCACCATGAAA 3232 Query 2681 GCGATTTTGTCAGCCTCACTGGTGCCGGTGATGTCGTT-CACTTCCAGACGCAGTTCCAT 2739 ||||| ||| || |||||| || || ||| || |||| | ||||||| || Sbjct 3233 GCGATGCGGTCTGCTTCACTG---CCTACGAAGTCTTTGCACT-CAAGACGCAACTCGTG 3288 Query 2740 G-CCGGTTTCTGCGGCCATCTTGGCACCGGCAAAGCGGTGGTGGCCGTCAATCACCTTGA 2798 | ||| || ||| | ||| ||| || ||| | ||||| |||||||| || ||||||| Sbjct 3289 GTCCGCTTCCTGTG-CCAGCTTCGCGCCGAAGTAACGGTGATGGCCGTCGATAACCTTGA 3347 Query 2799 TGCCATGCTGCGTCACTTCCACGGTCAGCGGAGGCACATATTCACCTGCCAGGTACGCAT 2858 | ||||||| || || | |||| |||||| ||||||| ||||| || | |||||| Sbjct 3348 TTCCATGCTCAGTGACCTGAACGGCCAGCGGTGGCACATGCTCACCCGCGATAAACGCAT 3407 Query 2859 CGCGGAATTCTTCAACGTGCGCCTGGTCCACGTCGCGGA 2897 | ||||||||||||||||| | |||||| | ||||||| Sbjct 3408 CACGGAATTCTTCAACGTGGGTCTGGTCAATCTCGCGGA 3446 >seq83571 Length=553 Score = 140 bits (154), Expect = 9e-29 Identities = 225/319 (71%), Gaps = 12/319 (4%) Strand=Plus/Plus Query 19264 TTCGATGGATTCAATCAACTGCGCTTTGGTCATCTTTTCAGCGCCTTCGATTTCCATATG 19323 |||||||| ||| | |||||| |||||||||||||| ||| | | ||| | || || Sbjct 195 TTCGATGGCTTCCAGCAACTGTGCTTTGGTCATCTTGTCATTGACGGTGATCTGCAACTG 254 Query 19324 TTCTGCAATAGCGATAAGCTGATCTTTGTTCATTTTCGTGATTTCAACATCTTCATCACG 19383 ||||| | | | || | ||||||||| | || | || | | Sbjct 255 CTCTGCCAGTTCAAGCAGTTCGGCTTTGTTCAGTGCGGTCAGGTCGCGCGGT-------G 307 Query 19384 CGCCGGT-TGTTCGTCGTGCATCACGGCTTTGCCACGTGACAACAGGTTTTTGGCCTCAA 19442 || ||| |||||| |||||| |||||||||| ||||||| |||||||||||| || | Sbjct 308 CGGCGGCCTGTTCGCCGTGCAGTTCGGCTTTGCCGCGTGACAGCAGGTTTTTGGCTTCGA 367 Query 19443 GCTCTGAAACCTCAACCAGTGAACCCGCTTTCATGACTTCACCGCTGATAGCAATGGCGG 19502 || ||||||||||| | ||||||||||||||| ||||| || | ||||||||| | Sbjct 368 TTTCCGAAACCTCAACGATTGAACCCGCTTTCATCACTTCGCCCTCAACAGCAATGGCAG 427 Query 19503 AAGTCAATTTCAGTACGTAAGTACCAGACATAAAACTGTCTCCTGTCGGAAAAGACT-AT 19561 |||||| |||||| |||| |||| | |||||| | |||| | || || | | Sbjct 428 AAGTCAGTTTCAGGGTGTAA-TACCGGTCATAAATATCACTCCATT--TAATGGAATAAG 484 Query 19562 GGCCGCCGAAGCGGCCATG 19580 ||||||| |||||||| || Sbjct 485 GGCCGCCTAAGCGGCCCTG 503 Score = 104 bits (114), Expect = 6e-18 Identities = 79/89 (89%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 18792 ATGAATAACGGC-GGGAAATGCAAACCCGCCGTTGGTGTCAAGGTC--AAAAAAGTCGTC 18848 |||||||||||| ||||| |||||||||| ||||||| ||| ||| |||||||||||| Sbjct 1 ATGAATAACGGCGGGGAATTGCAAACCCG-CGTTGGTATCA--GTCGTAAAAAAGTCGTC 57 Query 18849 CAGGTTTTCCCATGACGGCGCGGGCATTA 18877 |||||||||||| |||||||| ||||||| Sbjct 58 CAGGTTTTCCCAGGACGGCGCTGGCATTA 86 >seq29027 Length=2418 Score = 129 bits (142), Expect = 2e-25 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||| ||| | ||||||||||||| || ||||| || || || | | | || || Sbjct 1120 GATCCGGAAGTACGTTACATGCCAAATGGTGGCGCTGTCGCCAACATTACGCTGGCTACC 1061 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 |||| |||||| || || ||||| || || ||||| || ||||||||||| Sbjct 1060 TCTGAGAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACCGAATGGCACCGT 1001 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 || || | || || || ||||| ||| | || | ||||||||||| |||||| || Sbjct 1000 GTCGTGCTGTTTGGCAAACTGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGTTCTCAG 941 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 |||| ||||||||| ||||| || |||||||||||||| |||| || || || Sbjct 940 GTGTATATTGAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGCGGTCAGGAACGT 881 Query 41445 TACACCACTGA 41455 |||||||| || Sbjct 880 TACACCACGGA 870 >seq75476 Length=556 Score = 114 bits (126), Expect = 3e-21 Identities = 109/136 (80%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 35835 GGGTCCATGCCTGGCAGGCATTCGCGCGCCTGTGCTGCTGCGCTGGTGGCCGCCAGGAGG 35894 |||||||||||||||||||||||||| |||||||||| |||||||| ||||||| | Sbjct 325 GGGTCCATGCCTGGCAGGCATTCGCGTGCCTGTGCTGTGAAACTGGTGGCTGCCAGGATG 266 Query 35895 AAAGCGGCGATGATAAGTTTTTTCATGGTGTCACCTG-TGAGAACTGCCCG--GCGCACC 35951 |||||||| | | ||||||||| |||||||||| |||||| ||||| | | || Sbjct 265 GCTGCGGCGATAAGTATTTTTTTCATCGTGTCACCTGTTGAGAAAAGCCCGGAGTGATCC 206 Query 35952 GGGC--ATGGTTGTTA 35965 |||| ||||||||| Sbjct 205 GGGCGGTTGGTTGTTA 190 >seq16638 Length=4153 Score = 98.7 bits (108), Expect = 3e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 41273 CTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCAT 41332 ||||||||| || ||||| || || | || | || |||||||||||||| || | Sbjct 4153 CTGGAAGGACAAGCAGACCGGTCAGCAGCAGGACCGCACCGAATGGCACCGCGTGGTGTT 4094 Query 41333 CTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCAT 41392 ||||||| || || || || || |||| ||| | ||||| || | |||| | | Sbjct 4093 CTTCGGTCGTCTCGCCGAGATCGCCGGCGAGTACATCCGCAAGGGCTCCCAGGTCTATGT 4034 Query 41393 TGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCAC 41452 || |||| ||||| || || |||||||||| ||||| || |||||||||||||| Sbjct 4033 CGAGGGCACTCTGCGTACCCGCAAATGGCAGGGCCAGGACGGTCAGGATCGCTACACCAC 3974 Query 41453 TGAAATC 41459 |||||| Sbjct 3973 CGAAATC 3967 >seq27043 Length=582 Score = 96.9 bits (106), Expect = 9e-16 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 11973 GCGTTCGAAACCATGAAATCAAGACGCACCACCGTGTCAGCGTATGCGCCTTCGGTGTCC 12032 || ||||| |||| ||| | | |||| ||| | ||| | ||| ||||| ||| | || Sbjct 45 GCATTCGAGACCAGGAATTGCACGCGCAGCACAGCGTCCGAGTAGGCGCCCTCGCCGGCC 104 Query 12033 TGTGGTTTATAGGTGGCAGGCAGGTTGCCAACCACGAACAGTGAACCGTCAGAATCAAAC 12092 | || || |||||| | ||||||||||| |||||||| || || | ||| | Sbjct 105 AGCGGCTTGTAGGTGTCCGGCAGGTTGCCGACCACGAATAGGCTGCCCTGGTCGTCATAG 164 Query 12093 ACGCCAACTTCGCGCAGAGTAAAGCCGCCAACGCTTGCCGGAATAACCAATTCAGCTGTG 12152 | ||| || |||||||| ||||||||||| ||| || || || | || || || Sbjct 165 AGGCCGACCTCGCGCAGGGTAAAGCCGCCGGTAGCTGCAGGGATGACGATCTCGGCGATG 224 Query 12153 AACCGCAGCGGGTCGTCAGGTGCCTGGTAAACGCGGTTAATTACCGCGCGGTATCTCTCG 12212 || | | | | ||||| | ||||||| |||||||| || | ||| || | |||| Sbjct 225 AAGCCCCGGGCATCGTCCGCATCCTGGTAGACGCGGTTGATGGTGGTGCGATAGCGCTCG 284 Query 12213 CGCACAAGTTG 12223 ||||| || || Sbjct 285 CGCACCAGCTG 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133003483120800