Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq41695 122 1e-22 seq97857 114 2e-20 seq79110 89.7 6e-13 seq57763 89.7 6e-13 seq40057 87.8 2e-12 >seq41695 Length=397 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||| || || |||| || || ||||| || || ||||| ||||| |||||| | || || Sbjct 118 GGCGAAATCGCGGTGCAGCCCTTCATCGCGCGAGATAAGCTCATTCGAGAAGGAAAGGCC 177 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | |||||| ||||||| ||| || || | |||||| || || |||||||| || Sbjct 178 CGGCATCATACCCCGTTTCTTCAGCCAGTAGATCGAGCAGAACGATCCCGAGAAGAAAAT 237 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || ||||||||||| || || |||||||| || Sbjct 238 CCCCTCAACGACCGCAAACGCAATCAGCCGCTCGGCGAATGA 279 >seq97857 Length=911 Score = 114 bits (126), Expect = 2e-20 Identities = 310/468 (66%), Gaps = 5/468 (1%) Strand=Plus/Plus Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| || || | || ||||| || || ||||| |||||| | |||||||| | Sbjct 303 TGGCAGTGCTAGAGAGGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGTGTACTCAAC 362 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 ||| || || |||||||| ||||| || || || | |||||| ||||| || | | Sbjct 363 AATCTCAGTGCATAAGTTCGAACTGCGGATAGTGCCGAGATTCTTCTGGTTGCTTTGCG- 421 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 |||||| || |||||||| |||||| |||| | || ||||| || || | | ||| || Sbjct 422 GTTGCAAGCGTCCTTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAGCCTCGAGGAT 481 Query 111409 AGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCC-CTCCGCCTCGTACT 111467 || | | | | || | ||| | || | | | || | || ||| || Sbjct 482 GGCATACGAG-CTTCTG-GGCGCGAACGGTCTCAC-GACCTTTGTTCTTTTTCTCATAAC 538 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 111527 || ||||||||| |||||||| ||||| |||| | |||||| || || || | Sbjct 539 TTTCGTAGAGGGCCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGACACTCGTTGG 598 Query 111528 GACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 |||| | |||| ||| | ||| || | || ||||||||||| || || || |||| Sbjct 599 GACACATCAGAGTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGATCCGGGATCC 658 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||||| | || | || | | ||| | || || | || ||||| || | | Sbjct 659 ACAGGGCGTAGAATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGGTTCTTACGAAGGT 718 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | | ||| | | ||||| |||||||||||||| || |||| ||||| Sbjct 719 CCAAGAAGCCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGA 766 >seq79110 Length=913 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 |||||||||| | || ||||||||| || | || || |||||| |||||||||| Sbjct 908 CATAGATACCATCAATGCTGTCCTCCTTCATGTCAATCAGAAAGCAAGATGACATCTGCG 849 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGAC 112003 | || || || || ||||| || ||||| | || ||| | || ||| ||| ||| Sbjct 848 GCGAAGGGGTGCCGGCGTTGAAAAGCGTTGGGGAGGCATGAGT-AAAGTACTTTTGTGAC 790 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || | |||||| || || | | | || || || || ||||| || |||| ||||| Sbjct 789 ATGTAGTCGTACGTTTCGATGGCCTTTTCGATATCCTCGCCGTGAATACCGACAGCGACA 730 Query 112064 CGCATGAACATGTACTGTGGG 112084 ||||||| ||||| |||||| Sbjct 729 CGCATGATCATGTGTTGTGGG 709 >seq57763 Length=521 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 9162 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 9221 || || |||||| |||| |||||||||||||||||| |||| ||||| || ||| Sbjct 438 TACCAGGCCTCTACCTCGGAGATGTTTGGTAAGGTTCAGGAAATCCCACAGAAAGAGTCA 379 Query 9222 ACACCCTTCTACCCACGCTCGGTC-TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGT 9280 || |||||||| || || | | | || || || |||| | || || ||| | Sbjct 378 ACGCCCTTCTATCCGCG-TAGTCCTTATGGTGTGGCAAAACTCTATGCGCACTGGATGAC 320 Query 9281 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 9340 | ||| || || ||||| || || | ||||| |||||||| || |||||||| ||||| Sbjct 319 GATAAACTATCGTGAGTCCTATGGTATTTTTGCCTGCTCCGGGATTCTCTTCAATCATGA 260 Query 9341 ATCACC 9346 ||| || Sbjct 259 ATCGCC 254 >seq40057 Length=838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 228/348 (66%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| ||||||| || || | || |||||||| |||||||| ||| | || || | Sbjct 116 CCGCTTCTATCAGGCATCCACTTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCGCAGAT 175 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| || || ||||| || ||| |||||| || | ||| | || || || Sbjct 176 CGAGAGCACGCCTTTCTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTG 235 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | | || || ||||||||||| ||||| | || | | ||| || |||||||| Sbjct 236 GATGACCATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAA 295 Query 9335 CCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAA 9394 ||| ||||| ||| || || || || |||||| ||||| ||||| | ||| Sbjct 296 CCACGAATCCCCGCTGCGCGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGC 355 Query 9395 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 9454 | |||| | ||| | ||| | | || |||| ||| | |||| || | || Sbjct 356 CAAGATCAAGCTGGGCAAGCTGGACGTACTGGAGCTGGGCAACCTCGACGCCAAGCGCGA 415 Query 9455 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCA 9502 ||||| ||| ||||| || || || | ||||||| |||||| || Sbjct 416 CTGGGGCTTCGCCAAGGAATACGTCGAGGGCATGTGGCGCATGCTGCA 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627009092880000