Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq97857 156 5e-33 seq41695 113 5e-20 seq46431 98.7 1e-15 seq51865 91.5 2e-13 seq104936 89.7 6e-13 seq57763 89.7 6e-13 seq44974 89.7 6e-13 seq117378 84.2 3e-11 >seq97857 Length=911 Score = 156 bits (172), Expect = 5e-33 Identities = 314/458 (69%), Gaps = 11/458 (2%) Strand=Plus/Minus Query 104610 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 104669 ||||| |||| || |||||||||||||| ||||| | | ||| | || | ||| | Sbjct 766 TCGCAATCTACCTCGAGCCATGGCACGCCGATATATTTGGCTTCTTGGACCTTCGTAAGA 707 Query 104670 ACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 104727 |||| || | ||||| | |||| | ||||| | |||| ||| || ||||| || || Sbjct 706 ACCATGGCAAAGAGGAAGTTCGCGCT--CGCGACTTATTCTACGCCCTGTGGATCCCGGA 649 Query 104728 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 104787 ||||||||||||| | || | |||| ||| | ||| |||| | ||||| || || Sbjct 648 TCTCTTCATGAAGCGTGTCCAAGAGAATGGGGAGTGGACTCTGATGTGTCCCAACGAGTG 589 Query 104788 ACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG-- 104845 ||||||||| | || | | ||||| |||||||| ||||| ||| || || ||| Sbjct 588 TCCTGGTCTCGCGGACGTCTACGGTGATGAGTTTGAGGCCCTCTACGAAAGTTATGAGAA 529 Query 104846 GAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAG 104905 ||||| || || || ||| || | || | || | | | | || || ||| || Sbjct 528 AAAGAACAAAGGTCG--TGAGACCGTTCGCGC-CCAGAAG-CTCGTATGCCATCCTCGAG 473 Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 ||||||| |||||||||| || | |||||||||||| ||||| || |||| || || Sbjct 472 GCTCAAACTGAGACTGGTAATCCCTTCATGCTTTACAAGGACGCTTGCAACCGCAA-AGC 414 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 || || |||||| | || ||| ||||| || | || || || || | || | Sbjct 413 AACCAGAAGAATCTCGGCACTATCCGCAGTTCGAACTTATGCACTGAGATTGTTGAGTAC 354 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 || | | ||||||| ||||| |||||| | || || Sbjct 353 ACCGCCCCAGATGAGGTTGCTGTCTGTAACTTGGCCTC 316 >seq41695 Length=397 Score = 113 bits (124), Expect = 5e-20 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 94719 TGAA-GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGT 94777 |||| |||||| | || | ||||| |||| || || || || |||||| || || | Sbjct 349 TGAATGCCATCGATACGATCCCGTGCGTTCAGAAAAAGGCCGAGTGGGCTCTGCGCTGAT 290 Query 94778 TTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTA 94837 |||| || |||| || || ||||| || | || |||||| |||||||| | Sbjct 289 C-GATAA-----CG-GTTCATTCGCCGAGCGGCTGATTGCGTTTGCGGTCGTTGAGGGGA 237 Query 94838 TCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAG 94897 | |||||||| || || |||||| | || || ||||| ||||| || ||| | ||||| | Sbjct 236 TTTTCTTCTCGGGATCGTTCTGCTCGATCTACTGGCTGAAGAAACGGGGTATGATGCCGG 177 Query 94898 GTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 | || | |||||| || ||||||||||| || || || || || |||| Sbjct 176 GCCTTTCCTTCTCGAATGAGCTTATCTCGCGCGATGAAGGGCTGCACC 129 >seq46431 Length=357 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/292 (68%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| |||||||| || ||||| || ||||| ||||| | || || || || Sbjct 290 CTGACGGTCAAAGCGGCCCGGACGCAGCAGCGCAGGGTCAAGTACGTCTGGACGGTTGGT 231 Query 9580 CGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9637 |||||| || || | || ||| ||| | || |||| |||||||| || || | Sbjct 230 CGCGGCAATCACGATGATGCCTTCGTTACCTT--CAAAGCCATCCATTTCAACCAGCATC 173 Query 9638 TGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTT 9697 ||||| | ||||||||| || ||||| | | | |||||||| ||||| Sbjct 172 TGGTTCAGAGTTTGTTCACGCTCATCGTGACCACCCCCTAAACCAGCACCACGTTGACGA 113 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || |||||||| |||||||| ||||||| ||||| ||| || ||| |||| Sbjct 112 CCAACGGCATCGATCTCATCGATGAAGATAATGCACGGTGCCGCTTTCTTAGCCTGTTCA 53 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 || | || || || || || ||||||||||| ||||| || ||||||| Sbjct 52 AACATGTCACGGACGCGGGATGCACCCACACCAACGAACATTTCAACAAAGT 1 >seq51865 Length=821 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || || || ||||||||| ||| || ||| | | || | |||||||||||||| || Sbjct 445 GTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGC 504 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 |||||||| || ||| ||| ||||||||||| ||||| |||||||| || | ||| Sbjct 505 CTCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCGCGTGACGAAGGCATGCACACC 564 Query 94948 GAGTTTGC 94955 || ||||| Sbjct 565 GACTTTGC 572 >seq104936 Length=468 Score = 89.7 bits (98), Expect = 6e-13 Identities = 203/295 (69%), Gaps = 13/295 (4%) Strand=Plus/Plus Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAA 105207 ||||| || | | ||||||| | |||| |||||| || ||| | ||||| || Sbjct 4 AACCTGAATAAAATTATTGACATCAATTATTACCCGGTGCCAGAGGCCAAAAAAATCGAA 63 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAG-GGTCTCGCGGATGTATTC-ATTCTT 105265 ||||| || ||||||||||| |||| || || || || || |||| |||| | || Sbjct 64 CATGAG-CATCGTCCAATTGGAATCGGGGTGCAAAGGGCTGGCCGATGCATTCCAAATTT 122 Query 105266 TGTCGCCACGCATTTGATTCCGAC-GAAGCGAAGGAAATCAATGCGCGCATATTTGAGAC 105324 || || | | ||||||| || | || || ||| || | ||| | || || ||||| Sbjct 123 TGAGGCTTC-CGTTTGATTTCGCCTGAGGCCAAGAAACTGAATATTCAGATTTTCGAGAC 181 Query 105325 CATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATA 105381 |||||||||| || | ||||| ||| |||||||| | || ||||| || Sbjct 182 TCTGTATCACGCAGCCTTAGAGGC---TTCGAATGAGTTGGCCGTTACGGACGGTCCTTA 238 Query 105382 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||| ||||| ||| | |||| ||| ||||| | ||||||||||| |||||| Sbjct 239 TGAGACCTTCCAGGCT-CTCCTGCTAGTCAAGGCATTCTTCAATTTGACATGTGG 292 >seq57763 Length=521 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 ||||| ||||| || ||||||||||||||||| || | |||| ||||| || ||| Sbjct 438 TACCAGGCCTCTACCTCGGAGATGTTTGGTAAGGTTCAGGAAATCCCACAGAAAGAGTCA 379 Query 7298 ACACCCTTCTACCCACGCTCGGTC-TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGT 7356 || |||||||| || || | | | || || || |||| | || || ||| | Sbjct 378 ACGCCCTTCTATCCGCG-TAGTCCTTATGGTGTGGCAAAACTCTATGCGCACTGGATGAC 320 Query 7357 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 7416 | ||| || || ||||| || || | ||||| |||||||| || |||||||| ||||| Sbjct 319 GATAAACTATCGTGAGTCCTATGGTATTTTTGCCTGCTCCGGGATTCTCTTCAATCATGA 260 Query 7417 ATCACC 7422 ||| || Sbjct 259 ATCGCC 254 >seq44974 Length=881 Score = 89.7 bits (98), Expect = 6e-13 Identities = 89/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG--CTATTTATTGGCTCAAGAAGCGAG 94885 || || |||||||||||| |||| |||| ||| |||| | |||||||||||||| | Sbjct 697 GTCGAAGGTATCTTCTTCAGTGGTGCCTT-TGCCTACTATCTTCTGGCTCAAGAAGCGTG 639 Query 94886 GTCTCATG-CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 |||| ||| || || ||| ||||||||||||||| ||||| || || |||| Sbjct 638 GTCTGATGTCCCGGACTCACCTTCTCCAACGAGCTAATCTCCCGCGATGAGG 587 >seq117378 Length=621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 276/422 (65%), Gaps = 8/422 (2%) Strand=Plus/Minus Query 105179 TACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTT 105238 ||||| ||| || ||||| || ||| ||| ||||||| || || ||| | ||||| Sbjct 426 TACCCTGTTCAGGAGGCTCGCAACAGTAACATGCGACACCGACCTATCGGTGTTGGTGTC 367 Query 105239 CAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAA 105297 |||||||| || |||| ||| | || || ||| | || || || |||||| Sbjct 366 CAGGGTCTTGCCGATGCGTTCCTGGCTCTG-CGCATGCCGTTCGAGTCTCCCGAAGCTCG 308 Query 105298 GGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGA 105357 || |||| || || ||||||||||| || ||||| ||||| || | || Sbjct 307 TGAGCTCAACAAGCAAATCTTTGAGACCATCTACCACGCTGCTCTGACTGCCTCTGTCGA 248 Query 105358 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 105417 |||||| ||| | || || || ||||| |||| ||||| || || | || | Sbjct 247 GTTGGCCAAGGAGCAGGGACCTTACTCCACCTTCAAGGGCTCTCCCGCCTCCGAGGGTAT 188 Query 105418 GCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAA 105477 || || || || |||||| | | | || | | | || ||||| |||||| Sbjct 187 TCTCCAGTTCGACATGTGGAATGTTAAGCCTTCCGATTTGTGGGAGTGGGATACTCTCA- 129 Query 105478 GGAACG--CATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACA 105535 || || |||| |||| | || |||| ||| | | || | || || ||||| || Sbjct 128 -GAGCGGAGATCAGGGAGCACGGCATTCGCAACTCTTTGCTGCTCGC-CCCATGCCCACT 71 Query 105536 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595 ||||| | | |||| || |||| || || || ||||| || |||||||| | ||||| Sbjct 70 GCCTCGA-CTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACATCCAACATT 12 Query 105596 TA 105597 || Sbjct 11 TA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582310813972000