Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2641 154 4e-32 seq103626 114 4e-20 seq42932 109 2e-18 seq120733 104 7e-17 seq10678 104 7e-17 seq30797 87.8 5e-12 seq110334 86.0 2e-11 seq59051 86.0 2e-11 seq11240 84.2 7e-11 >seq2641 Length=263 Score = 154 bits (170), Expect = 4e-32 Identities = 159/207 (77%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 250 CATTCCACCACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATC 191 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||||| |||||||| | || || ||||||||||| || ||||| ||||| || Sbjct 190 GGCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGG 131 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || || |||| ||| | ||| ||||| || || | ||| || | ||| Sbjct 130 GGGAATACCCTCCTTGTCTTGAA-TTTGGTTTTGACATTGTCGATAGTATCCGAAGATTC 72 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||||||| || | ||||| ||||| Sbjct 71 AACTTCAAGGGTGATAGTCTTGCCGGT 45 >seq103626 Length=648 Score = 114 bits (126), Expect = 4e-20 Identities = 255/375 (68%), Gaps = 12/375 (3%) Strand=Plus/Plus Query 349525 ATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AG 349583 |||| ||| || || || ||| | |||||| | | || |||||||| | || || || Sbjct 135 ATTTACACCTGAGGAGATCTCAGCTATGGTTCTTGGCAAGATGAAGGAGGTCGCAGAGAG 194 Query 349584 CATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATG 349643 | || | || || | || | | || ||| ||||||| || ||||| || || || | Sbjct 195 C-TACCTTGGCGAGCCTGTCAAGAACGCAGTTGTTACTGTTCCTGCCTACTTCAACGACG 253 Query 349644 CCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA-TTGCGGGGTTAAATGTTCTAAGAATG 349702 | ||||| |||| || || ||||| | | || |||| || | || || || | || Sbjct 254 CTCAGCGCGCTGCCACCAAGGATGCCCGGAACAATTGCCGGTCTCAACGTCCTC-GTGTG 312 Query 349703 ATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaa 349762 | ||||| || || ||||| || | || || || ||||| || || ||| | ||| Sbjct 313 GTCAATGAGCCTACCGCTGCCGCTTTGGCTTACGGTCTTGACAA---GACAGACGA-GAA 368 Query 349763 aaaa----aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 | | |||| | | ||| |||||||||||||||||||||| || | || | Sbjct 369 GGAGCGTCAAGTTCTGGTCTACGATCTAGGTGGTGGTACTTTTGATGTGTCTATTCTCGC 428 Query 349819 ACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGA 349878 | || || || | ||||| ||| || | ||||| ||||| || ||||||||||| || Sbjct 429 TATCGAGGAAGGTGTCTTTGAGGTTCAATCTACTGCCGGTGACACCCATCTTGGTGGCGA 488 Query 349879 AGATTTTGATAATCG 349893 |||||||| || || Sbjct 489 GGATTTTGACAACCG 503 >seq42932 Length=2417 Score = 109 bits (120), Expect = 2e-18 Identities = 197/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 |||||| | ||||| | |||||| | ||||| | || || || |||||||| || Sbjct 1428 ATCATACTTGACCATGACATCTTCCAGGGCTTTGACTAGACGACGTTGGATATAACCGGT 1369 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 | ||| || ||||| || ||||| | ||| |||||||| |||| ||||||||||| Sbjct 1368 CTCGGCAGTCTTGACTGCTGTGTCAATAAGACCTTCACGACCAGCCATGGCATGGAAGAA 1309 Query 378303 TAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGG 378362 ||||| | ||||| | ||| | | | | || | |||| ||| || | | |||| Sbjct 1308 GAATTCTGAGGGAGTCAATCCGCGGAGATAGGAGTTTTCAACAAAGCCACGAGATTCTGG 1249 Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422 ||| | ||| | ||||| |||| || || || || | | ||||| || ||||| || Sbjct 1248 CGAGTAATCGTCCTTTGTGAAATGTGGCAAGGTCCGGTATTTGAACCCGTAAGGAATGCG 1189 Query 378423 TTTTCCATCAACATTCTGTTGACC---AAGTGCAGAAACCATTTGAG 378466 || || |||||| || || || ||| ||| |||||||||| Sbjct 1188 TTGGCCCTCAACAGCTTGCTGGCCGACAAGGGCA---ACCATTTGAG 1145 Score = 100 bits (110), Expect = 9e-16 Identities = 126/166 (76%), Gaps = 9/166 (5%) Strand=Plus/Minus Query 377421 TTTTGGATT--TTCAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACA 377478 |||||| || || | || ||||||| || ||||||| || ||||| ||| | || || Sbjct 2213 TTTTGGTTTCTTTGAAATGTTGATAAT-TTCCTTCAAT-CGAGGCACGCCAAGCGTTACG 2156 Query 377479 TTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGC 377538 ||| || || | ||||||||||| |||||||| || || || | ||||||| ||| Sbjct 2155 TTC---TTCGACGACACACCAGCAAAATGGAAAGTGTTCAGTGTCATCTGAGTAGCAGGC 2099 Query 377539 TCACCAATTGACTGCGCT-GCAATAACGCCAACCATTTCTCCAGGA 377583 ||||||| |||||| ||| |||| || |||||||| || |||||| Sbjct 2098 TCACCAA-TGACTGAGCTCGCAAGGACACCAACCATCTCACCAGGA 2054 >seq120733 Length=352 Score = 104 bits (114), Expect = 7e-17 Identities = 197/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 183504 AAGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAAT 183563 || ||||| || | || || | || || ||||| | || || || || || | | Sbjct 70 AAATCAATGCCTTCGTACAATGCGTCGATCTCAATGGTTGCTTCAGTGCTTGCCGAGAGT 129 Query 183564 GTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTA 183623 |||| ||| || |||||| ||| ||||| | ||| |||| || | |||||| ||| | Sbjct 130 GTTCGTTTGGCGCGTTCAGCTGCGGTTCTCAATCGTCGTAGTGCCCGTGGATT-TCTCTC 188 Query 183624 ATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCA 183683 | |||| | || | ||| | |||||| || ||| ||| | ||||| | ||| Sbjct 189 AAATCTCGCTTGTATTTGCGTTTAAACTCTTCGGCAAAGTGTGTGACCAATCTGTTGTCA 248 Query 183684 AAATCTTCACCACCTAAATGTGTATCGCCAGCAGT--AGCTTTAACTTCAAATATT---C 183738 || |||||||| || || ||||| || ||||| || ||| | |||||||| | | Sbjct 249 AAGTCTTCACCTCCCAAGTGTGTGTCACCAGCTGTCGAGCGT--ACTTCAAACAGGGAGC 306 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAA 183784 | || || || | | | ||||||||||||||||||||||||||| Sbjct 307 CATCGTCGATGGTCAGCACTGATACATCAAATGTACCACCACCCAA 352 >seq10678 Length=772 Score = 104 bits (114), Expect = 7e-17 Identities = 198/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| |||||||| || || || | |||||| || || || || Sbjct 575 ATGCCGTCGTCACTGTTCCAGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGACTG 516 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||| || | || |||| | || || || || || || || || || | Sbjct 515 CTGGTGTCGTTGCCGGCCTCAACATTCTTCGTATCATCAACGAGCCTACCGCCGCTGCCA 456 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 |||| || || ||||| || | | || || ||| | | || ||||| || | Sbjct 455 TTGCGTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAATGTGTTGATCTTTGACTTGG 396 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847 |||||||||| || ||||| || || | || |||| ||||| ||||| || || || | Sbjct 395 GTGGTGGTACCTTCGATGTTTCCCTTTTGACCATTGAGGAGGGTATTTTCGAGGTCAAGG 336 Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 | || |||||||| || || | ||||| || || || || || ||||| || Sbjct 335 CCACAGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGT 284 >seq30797 Length=220 Score = 87.8 bits (96), Expect = 5e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||| || | Sbjct 219 CCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGAC 160 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||||| || || | || || | || || ||||| || | |||||||| || Sbjct 159 TTTACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGAGTGATGGTCTTTCCAGT 104 >seq110334 Length=892 Score = 86.0 bits (94), Expect = 2e-11 Identities = 229/345 (66%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 |||||||| || || || || |||||||| || | | | || ||||| | ||| Sbjct 386 GGAATCGACTTGGGCACCACGTATTCTTGCGTGGGTTGCTTCCAGAATGACAAAATCGAA 445 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || | || || || || |||||| ||||||| || || | |||||| || || || || Sbjct 446 ATCCTCGCCAACGAGCAGGGTAACCGAACAACTCCTTCCTTCGTTGCTTTCACAGACACC 505 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAA-AATACGGT 349383 || || | |||| ||| ||| || || || | || || || | || || || Sbjct 506 GAACGACTTGTTGGCGATGGTGCCAAGAACCAGGTCGCCATGAACCCCCCACAACACCGT 565 Query 349384 TTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACA---AATCTACACAATCTGA 349440 ||||| || ||||| || || ||| | | ||||| ||| || | || | || Sbjct 566 CTTTGACGCCAAGCGTCTGATCGGTCGCAAATTTTCGGACCCCGAAGTT---CAGGCCGA 622 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | | || ||||| ||||| | ||||| | | ||| || | ||||| || || || || Sbjct 623 TATGAAGCATTTCCCTTTCAAGGTTGT-CGACAAG--GGCGGCAAACCCATCATCGAAGT 679 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTC 349545 ||| || | |||||| |||||||| ||||||||||| || Sbjct 680 TGAGTACATGGGTGAAACCAAACAATTCACCCCCGAAGAAATCTC 724 >seq59051 Length=1564 Score = 86.0 bits (94), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 ||| ||||| || | ||| |||||||||| | || |||||||| ||||| || || || Sbjct 259 TGCAGAAGCTTACCTCGGTCAAACAGTAACACAAGCCGTTATTACGGTACCTGCTTACTT 200 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 || || |||||| ||||||||||||||||| | || || || | | || || Sbjct 199 CAACGACAGTCAGCGTCAAGCAACAAAAGATGCTGGTAAAATCGCAGGTCTGGAAGTACT 140 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 | || | || || || || || |||||| | ||||| || | || ||| Sbjct 139 GCGTATTGTCAACGAGCCAACAGCAGCAGCACTGGCATACGGTTTGGAGAAA------TC 86 Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATC 349809 | |||| ||| ||||| | | ||| | ||||| ||||| ||||| ||||| Sbjct 85 CGAAGATCAAACGATTCTCGTATATGACCTGGGTGGCGGTACATTTGACGTATC 32 >seq11240 Length=5671 Score = 84.2 bits (92), Expect = 7e-11 Identities = 193/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 130716 CATTCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAAT 130775 || ||||||||||| || | ||| || || ||||| |||||||| || || | ||||| Sbjct 5393 CACTCATCATGTGCCGCCAGCATGCCGCCCAGCATGACAAAATCCGCACCGCCACCAAAC 5334 Query 130776 GCTTTCGCAATATC-CCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAA 130834 ||||| || ||||| ||||| | | || || ||||| | || || ||| | | Sbjct 5333 GCTTTGGCGATATCACCCGGCACA-GCGCATCCGCCATCGCTGACAATTTGCCCACTCAG 5275 Query 130835 TCCATGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGT 130894 || || |||||||| || ||||| | || || || || |||||||| || || || Sbjct 5274 GCCGTGCGCCGCATCGGCGCACTCAATCACGGCTGAGAGCTGCGGATATCCCACGCCGGT 5215 Query 130895 TACTTTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCC 130954 | | || || || || | || || ||||| || | || || ||||| ||||| Sbjct 5214 TTTGACGCGCGTGGTGCAGACTGAGCCCGGTCCAATCCCCACCTTCACGATATCCGCTCC 5155 Query 130955 TGCTAAAATTAGTGCTTCGGTCATTTCTCTAGTAGCCACATTACCTGC 131002 | | |||| ||||| |||||| | || | || ||||| || Sbjct 5154 GGACAGGATTAACTCTTCGACCATTTCCCCCGTGACGACGTTACCCGC 5107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512724730130900