Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq33108 187 3e-42 seq31280 131 2e-25 seq49234 102 9e-17 seq34305 96.9 4e-15 seq50823 84.2 2e-11 >seq33108 Length=3479 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 3806 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 3865 ||| ||||| || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 3866 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 3925 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 3926 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 3985 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 3986 TTC 3988 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 131 bits (144), Expect = 2e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 81503 TTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 81562 || ||||| ||||| || ||||| ||||| | |||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 81563 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 81621 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 81622 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 81681 ||||||||| | || ||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 81682 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAAT 81741 || ||| ||| |||||| ||||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 81742 CATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792 ||| ||||||| ||||| || ||||||| |||| |||| ||||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT 1631 >seq49234 Length=879 Score = 102 bits (112), Expect = 9e-17 Identities = 270/400 (68%), Gaps = 12/400 (3%) Strand=Plus/Plus Query 5699 GTAATACTTGTACCAGTGTGGCTTCATTAAAATTTTTTCATCGAGTCGTTGTTGACTCAA 5758 |||| |||||||||| ||||||||| |||| || ||| | ||| || || | | Sbjct 158 GTAA-ACTTGTACCAAGTTGGCTTCATCAAAAGCTTCTCAATCAAACGT-GT--ACGCGA 213 Query 5759 TTT-AATAGCTGATTTGC--ATGGATTATAATCATTTTTCCATTCTGCTGGAATATCGCT 5815 | |||| | ||| || ||||| || | ||||| || |||||||||| || Sbjct 214 TAACAATAATTCATTGGCTGATGGAGTAAAGTCATTACAA-ATGCTGCTGGAATGTCTGA 272 Query 5816 GATGTCAGGAACTTCAGTATCTTTTATACTAAACCCACGTTTTAAGCATTCCGTTA-TAA 5874 ||||| || |||||||| | || ||| ||||| | |||||| | | ||| Sbjct 273 TATGTCGTTAAATTCAGTATTGGTAATCTTAATACCACGACGAAGGCATTCATTAACTAA 332 Query 5875 TGTCTGATTGACGCTTTCGCAAAAATTCTAACTTATCGTAAAAGAACTTAACATGACCAG 5934 | |||| || ||| | ||| || ||| |||| || || || |||||||||| | Sbjct 333 TTGAACATTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTG 390 Query 5935 AGCCTAAAATAAACTCGGAAGATATTTTAAAATCTTTAACCCGCTTACCATTTGCCACAT 5994 |||||| | | | | ||||||||||| || | || |||||| | || | Sbjct 391 TACCTAAATGTAGGTAGTACTG-ATTTTAAAATCATTGATTCGTTTACCAGCTTGTACGT 449 Query 5995 GTTTACGAACTATACCAAAAACACGCGGCAATTCACGATACTCAGCCATAAGATGTTGGT 6054 | |||||||| ||| || ||||| ||||||||||| || ||||||||||||||||||| Sbjct 450 GCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGT 509 Query 6055 CGGTCAGTTCAGAAACAAGTGTTAAATTGATACGAGTCAT 6094 | | | ||| || || | ||||||||| ||||| Sbjct 510 CAGCTAATTCTTGTACTGGTACGAGATTGATACGGGTCAT 549 >seq34305 Length=2218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 3819 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 3878 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 3879 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 3938 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 3939 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 3989 || |||| || || |||||||| ||||| || || || |||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCA 769 >seq50823 Length=3276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 5957 TATTTTAAAATCTTTAACCCGCTTACCATTTGCCACATGTTTACGAACTATACCAAAAAC 6016 |||||||||||| |||| || ||| | || ||||| | ||| |||||| || Sbjct 172 TATTTTAAAATCATTAATATT-TTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATAC 230 Query 6017 ACGCGGCAATTCACGATACTCAGCCATAAGATGTTGGTCGGTCAGTTCAGAAACAAGTGT 6076 ||| || ||||||||||| |||||||| |||||||| |||| || ||| ||| | Sbjct 231 ACGTGGTAATTCACGATATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAAC 290 Query 6077 TAAATTGATACGAGTCAT 6094 |||||| || |||||||| Sbjct 291 TAAATTTATCCGAGTCAT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534893770476000