Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq35206 636 7e-178 seq101427 125 3e-24 seq43257 120 1e-22 >seq35206 Length=1909 Score = 636 bits (704), Expect = 7e-178 Identities = 944/1316 (72%), Gaps = 43/1316 (3%) Strand=Plus/Plus Query 149 TTTGTTCACTTGCTAATGCGTACATATTGAGTACAGAAT-ACAT-TATAAACTTGTGTAC 206 || |||||||||| | ||||||||||||||||||||||| ||| ||| | |||||| Sbjct 144 TTCGTTCACTTGCCATTGCGTACATATTGAGTACAGAATGACAGCTATCGGAT-GTGTAC 202 Query 207 AGGATATAAAGCATTGGCACTGAGCGACACCAAACTACGAGGCCTCTACGGAAAACCCTA 266 |||| ||| | | |||| || ||||| |||||||| || | | |||| || ||||| Sbjct 203 AGGAAATATAACGATGGCCCTCAGCGATACCAAACTGCGCAGTATAAACGGCAAGCCCTA 262 Query 267 CTCTGGCCCTGCTGAAATCACCGATGGTGACGGGTTAAGTGTGCGGATTACTCCAGCAGG 326 | ||||| || || | ||||| | ||| || | || | ||| ||||| || || Sbjct 263 CAGCGGCCCGGCAGAGGTGACCGACGCTGATGGCCTGAGCGCGCGCATTACGCCTAATGG 322 Query 327 AACTATCACGTTTCAGTACCGTTATCGCTGGAATGGTAAGCCAGTACGTCTTACTGTCGG 386 || ||| | |||||||| || ||||||||| | |||||| ||||| | || | || Sbjct 323 TACCATCGC-TTTCAGTATCGCTATCGCTGGCAAA-TAAGCCTGTACGCATCACGCTTGG 380 Query 387 GCGCTATCCGTCTACTTCACTGAAGGACGCGCGTGTTATCGTCGGTGAGATGCGCGCATT 446 |||||||| | | || || || || ||||| || ||||| || ||||| |||| Sbjct 381 CCGCTATCCTGCGATGTCTCTCAAAGAGGCGCGCGTAGCGGTCGGCGAAATGCGGACATT 440 Query 447 GTACATGAAGGGAGTTAACCCTAAAAATTATTTTGCGCCCAGTGACGGCGAACTGACATT 506 ||||||| ||| ||||||| |||| |||||| | ||| ||| |||||||| | Sbjct 441 GTACATGCTGGG--TTAACCCCAAAACTTATTTGGTCGGCAGCAGCGGGGAACTGACGCT 498 Query 507 AAAAGAATGCCTGGATCAGTGGTGGGATAAGTATGTTACTGATCTGAAACCCAATACACA 566 | |||| ||||| ||| |||||||| | ||||| ||||| | || ||| || |||| Sbjct 499 ACAAGACTGCCTCGATGAGTGGTGGAACAAGTACGTTACCGGGCTAAAAGAAAACACACG 558 Query 567 GACGCTTTACAGATCCGTCGTGTACAACACTATGTACACACAGTTTGAAGGCT-CGCCAG 625 | || |||| || || ||||||||||| ||||||||||| ||| |||| | ||| | Sbjct 559 CATTCTGTACAAGTCAGTTGTGTACAACACCATGTACACACAATTT-AAGGATGTGCCGG 617 Query 626 TTGCCAGTATCCCAGTATCGGCATGGGCTCGTTTCTTTGACAAACAAGAA-AGCCTCAAC 684 | || | || | || ||| |||| | || || ||||| || ||| || | |||| Sbjct 618 TAGCAAACATAACTGTGTCGCTCTGGGTGCAATTTTTCGACAAGCAGGAACAGGC-CAAC 676 Query 685 AAGAAAAAGGCTCGTGTTTTGTTGTTACAACTGCGTTCAGTTATTAACTGGTGTATCAGC 744 ||||| || || | || || || | ||||| || |||| | ||||||| |||||| Sbjct 677 AAGAAGAAAGCCAGGGTACTGCTGCTGCAACTCCGATCAGCCA-GGACTGGTGCATCAGC 735 Query 745 CGCCAGTTAATCCCATCATGCGAATTACTCAAGCTTAGTGTTAAGAATATTGGGAAAAAA 804 |||||| | || || ||||| ||| | ||||| || || ||||| ||||| ||| ||||| Sbjct 736 CGCCAGCTTATTCCGTCATGTGAAGTGCTCAAACTCAGCGTTAAAAATATCGGG-AAAAA 794 Query 805 CCAGATGTAGG-GAGTCGTGTACTTACCTATACGGAACTGGCAAAAATTTGGCTGGCGCT 863 || ||| || ||| || || || ||||||| |||||||| ||||| ||||||||||| Sbjct 795 CCTGATACCGGTGAG-CGCGTTCTCACCTATAACGAACTGGCGAAAATCTGGCTGGCGCT 853 Query 864 GGAGAACTCAAAAGTAGTTACTTCCAACAAGGTGTTACATCAATTGCTATTGCTATGGGG 923 ||| ||| ||||| || | || || || | | || ||| |||| ||| | ||||| Sbjct 854 GGAAAACAATAAAGTCTTTTCCTCTAATAAAATCCTTCACCAAATGCTGTTGTTGTGGGG 913 Query 924 GGCCAGACTTTCTGAGCTACGTCTCGCGACAGCCAG-TGAGTTCAACATGGAAGATCTGG 982 |||| | ||||| || || || || | | || | ||| ||||||||||| ||||| Sbjct 914 GGCCCGCCTTTCAGAACTGCGGCTGTCTAACCCCTGCTGAATTCAACATGGATGATCTTA 973 Query 983 TCTGGACAACCCCAAAAGAGCATTCAAAAATGGGGAATATTATCCGGCGTCCGGTATTCA 1042 ||||||| || ||| |||||||||||| ||||| || |||||| |||| || | ||| Sbjct 974 TCTGGACGACGCCAGCAGAGCATTCAAAGATGGGTAACATTATCAGGCGGCCTATTTTCG 1033 Query 1043 CTCAGGTTAAACCTTATATCGAGAGATTGCT--TAATG-----CGGGTTTTGATGTGCTA 1095 ||| | | || ||| | || || |||| |||| | |||| || Sbjct 1034 AACAGATACAGCCGTATGTTGAAAGGCTGCTCGCAATGAAAATCCGGTTATG-------- 1085 Query 1096 TTCCCCGGGCAGGAAATAGATAAACCTATTGATCGTTCGTCGGCTAATTTGTACATG--- 1152 || ||||| |||||| | || | | |||| ||||| || ||| ||| |||||||| Sbjct 1086 TTTCCCGGTCAGGAACTGGACACAGCTATAGATCGCTCATCGTGCAATCTGTACATGCGT 1145 Query 1153 AAAAAGTTAAGGGAGAAAATTGATATTCCTGAATGGAGAACGCATGATTTTAGGCGTTCT 1212 ||| | ||| ||||| |||||||| |||||| | ||||||||||| |||| | Sbjct 1146 AAACTGCGAAG---CAAAATCGATATTCCCGAATGGCGCACGCATGATTTCCGGCGCACC 1202 Query 1213 CTGGTAACGAATTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGG 1272 |||||||||||| | || | ||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 1203 CTGGTAACGAATCTGTCAGAGGAAGGAATATTGCCCCATGTCACCGAAAAGATGCTGGGG 1262 Query 1273 CATGAACTTGGGGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAG--- 1329 |||||||| || || || ||||| ||||| || ||||| |||||| || || ||| Sbjct 1263 CATGAACTGGGCGGGGTAATGGCGGTGTACAACAAACATGACTGGCTGGAAGATCAGCGT 1322 Query 1330 AAAGATGCGTATGAGTTGTATGCTGATAAAATTTTCTGGCACGCTAAACAGCTCGGTTAA 1389 |||| | |||||| | || || ||||||||||||||||||| ||| ||| |||||||| Sbjct 1323 AAAGGT---TATGAGCTCTACGCGGATAAAATTTTCTGGCACGTTAAGCAGATCGGTTAA 1379 Query 1390 TTCCTCCGGCTTTAAGCCATTGTTCAACGGCCTGACGACTATATCGCGCCGGATGA 1445 | || || | | || ||| || || || || || || || ||||||||| Sbjct 1380 TACCGCCTTCATCAATCCACCTTTTGACCGCTGCGCGGCTGTAACGTGCCGGATGA 1435 >seq101427 Length=713 Score = 125 bits (138), Expect = 3e-24 Identities = 414/623 (66%), Gaps = 22/623 (4%) Strand=Plus/Plus Query 2891 TGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGAC 2950 |||| ||||||| || |||||| | ||| |||||||| |||| |||||||||||||| Sbjct 27 TGAGGCCCGCCAGCCGACGATGCGCCGGGCGAACACATCGATGACGAACGCCACATAGAC 86 Query 2951 GAAG-CCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 3009 |||| || ||| || ||||| || || || ||||||| | || || Sbjct 87 GAAGTCCGACCCACGTCGCCACGTAGGTGAAGTCGCTGACCCACAAAGCATTCGGCCGGG 146 Query 3010 CTGCCACGAACTGACGGTTTACGCGGTCGCCTG--CGGCAACGG-CTTTCCGGCTGATGG 3066 ||| |||||||||||| ||||||||| | ||| ||| | |||| ||| | Sbjct 147 GAGCCTTGAACTGACGGTTGACGCGGTCGAGAGGCAGGCCGCGGCCGGATCGGC-GATCG 205 Query 3067 TCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTG 3126 | || || || | | || || | || ||| |||| || || || ||| || || | Sbjct 206 TGGTGCGCACGGTCCTGCCACGCACCACCCCGCCAAGCCCAATCGGCG-CATCAGCCGCG 264 Query 3127 CCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAA-CTGACGCCAGACTTTACGC 3185 |||| || |||| || || ||| || ||||| || || |||||||| || ||| Sbjct 265 CCACCGTGCATCGAGCGGCCACGATCCCCTCCCGCGCTAAGTTGCCGCCAGACCTTCCGC 324 Query 3186 ACACCGT--ACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGT 3243 || |||| || || || | || | ||| | || |||| |||||| || ||| | | Sbjct 325 ACGCCGTAGACGCCAGAAG-TTGGCCTCGAACACACGCTTTATCTCGATCATCAACGCGG 383 Query 3244 CGTCG-TGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATG- 3301 ||||| ||| ||||||| | | || || |||| ||| | || | ||| Sbjct 384 CGTCGCTGC-GCGCACGAACCGGTTGCTTCTCAGGATCGGCACGCCG-GGCGG--CATGC 439 Query 3302 --GTAATACGTTGAC-GGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTG 3358 ||| || || ||| ||||| || |||| | ||||| | ||| |||||||||| Sbjct 440 ACGTAGTAGGTCGACGGGGGCGATCGGCAGCACCCTGCAGATCGGCTCGACCCCGTAGAC 499 Query 3359 CTCACGCAGCTTATCCA-GCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTT 3417 ||| || | | || | | || | ||||| | | ||| ||||| ||||||| | Sbjct 500 CTCCCGATGATCGTCGATGAAGCTG-ATCATGGCCGCGACCGGC-GTCGAGCTCCGCCAT 557 Query 3418 CGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTC 3477 || ||||| || || |||| ||| ||||| ||||| ||||||| ||||| || || Sbjct 558 GGCGAAATACGCCGACGCCTTGCGCAGGATCTCGTTGGCTTGGCGCAGCTCACGGTTCTC 617 Query 3478 ACGTTCCAGCTCTTTCAGACGCT 3500 |||||| ||| | || | |||| Sbjct 618 ACGTTCAAGCGCCTTGATCCGCT 640 >seq43257 Length=1618 Score = 120 bits (132), Expect = 1e-22 Identities = 200/285 (70%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 32266 GAACGGGATAAGGCGCTGGCATGGGTGGAGCGTAATA--TAAAAGTTCCACTGACCGAGC 32323 |||| || ||| || | || ||||| || ||| | || | |||||||||||||| | Sbjct 891 GAACAGGCTAAAGCATTAGCCTGGGTAGA---TAAAACGTACACGTTCCACTGACCGAAC 835 Query 32324 CACAAAAAGCAGGTATCGCGTCATTTTGCCCCTATAACATTGGCCCCGGTAAGTGTTTCC 32383 | || || | || || |||||||| || || | ||||||||||||||||| || | | Sbjct 834 CGCAGAAGGTTGGCATAGCGTCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGC 775 Query 32384 CGTCGACGTTTTATAAGCGGCTTAATGCAGGCGATCGCAGGGGAGCGTGTGAGGCGATTC 32443 | || ||||| || | || || |||||||||||| ||| || |||| | ||| Sbjct 774 CATCAACGTTCTACCGGAAACTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAA 715 Query 32444 GCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGTTCAAACAACTGTTACGGTC 32503 | ||||| ||||| || | ||| ||||| || || || || ||||||||| | Sbjct 714 AGCGCTGGATATTCGACGGCGGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGC 655 Query 32504 AGGT-ATCAAGACGTGACCAGGAGAGTGCGCTGGCATGCTGGGGT 32547 | || ||| | ||||||||||| | ||| ||||||||||| Sbjct 654 AAGTTATCC-GCCGTGACCAGGAATCAGAGCTCACATGCTGGGGT 611 Score = 89.7 bits (98), Expect = 2e-13 Identities = 183/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 33701 ACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTGATGCCAGATACTCG 33760 || |||| |||||||||| ||||||||| |||||||| |||||||||| |||| | Sbjct 444 ACAATTAACGATATGCAGCGTCGCCAGCGTTCAGTTGCTGCGCTTGATGCCAAATACACA 385 Query 33761 AGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTCGCGCT-GACGTTGCCGCTGG 33819 | |||| | |||||| | ||| | || || | | ||| || |||| |||| Sbjct 384 AAGGAACTTAACGATGCTAAAGCA-ACTATCAATCAGCTTAAGCTTGATGTTGATTCTGG 326 Query 33820 TTACCGCAGCCTGCGGATCAACGCCACCTGT---CCAGGTCCCGTGCGTGAAGCCACCGG 33876 | ||||| ||| |||| ||||||||| |||| | || || | ||||| | Sbjct 325 CAAGCGCAGGTTGCAACTCAATGCCACCTGTAAGCCAGC-CGCGACCGGCA--CCACCAG 269 Query 33877 CACCGCCC-GCGTGGATAATGCAACCGGCCCCCGACTGG-CAGACACCGCTGAACGGG-A 33933 | || || || ||| | |||| || |||| |||| ||||| ||||| |||||| | Sbjct 268 CGCCACCAAGCATGGCTGATGCTTCCA-CCCCAGACTTTACAGACTCCGCTCAACGGGGA 210 Query 33934 TTATTTCACCCTCAGAGAGAG 33954 |||||| ||||||||||| || Sbjct 209 TTATTTTACCCTCAGAGATAG 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202973159599000