Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq19617 140 3e-28 seq43510 95.1 1e-14 >seq19617 Length=1959 Score = 140 bits (154), Expect = 3e-28 Identities = 196/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 30083 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30142 |||||||| || | ||||||||| || ||| || |||||| |||| || |||||| Sbjct 1903 TGGCACGGTGGTAAAGCCATGAGATGTAAATCTCGGGCGTTCCATGCGCTCATGATGATC 1844 Query 30143 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 30202 || | ||| | ||| |||||| |||| ||| | ||| | |||||||| || ||| Sbjct 1843 CGTCGGTCGTATGGCTTGTTCTTGATCTTGTCTATAACGTCTGCGAGCTGATCGACGCCC 1784 Query 30203 ATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAAC 30262 | |||| |||||| | | | ||| ||||||||| || || |||| ||| |||||| Sbjct 1783 TTGCCCGTGTAGTCCGTCTTTGCATCCACGTACTCTGCGCCAAAGTGCCGCCATTGGAAC 1724 Query 30263 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 30322 |||||||| ||||||||||| || | || | |||| || ||| ||||| | || Sbjct 1723 CCGTACACGGGTCCCAGGTCGCCTACCTCGCGGTGCGTGAGGCCGAGGTTGTCTAGGAAC 1664 Query 30323 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357 || | || ||||| | ||||| ||||| || || Sbjct 1663 TCGCGTGAGCCGTTTCCATCCCATATCTTGACGCC 1629 >seq43510 Length=3912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 || || | ||| || || ||||| |||| || || || ||| | || |||||| | Sbjct 589 AGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACGCCCAGGCCGGTGGCC 648 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || |||| ||||| || || || | ||||||||||||||| || || || || || Sbjct 649 TGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAA 708 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 ||||| || | |||||| ||||| || ||||| |||||| |||||| ||||| Sbjct 709 ATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGACCACGTAGAACTGG 768 Query 30074 CACATGGCGTGGCACGG 30090 ||| | ||||||||| Sbjct 769 AACAGGCTGTGGCACGG 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405665166387600