Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq28556 125 6e-24 seq2641 123 2e-23 seq29103 96.9 3e-15 >seq28556 Length=388 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || || || ||||| || | || Sbjct 282 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACGCTAGAAGTAGAGTCTTCG 223 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || |||||||||||||| || || || || Sbjct 222 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAAGAAGGCATTCCTCCGGACCAG 163 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || ||||||||| Sbjct 162 CAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGATTACAAC 103 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||||| ||| | || ||||| Sbjct 102 ATTCAAAAGGAGTCTACCCTTCACTTGGT 74 >seq2641 Length=263 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| |||| || |||||||| ||| | || || | || || | |||||| Sbjct 43 TGACCGGCAAGACTATCACCCTTGAAGTTGAATCTTCGGATACTATCGACAATGTCAAA- 101 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 | ||||||||||||| || || || || ||||||||||| || | || | || || | Sbjct 102 ACCAAATTCAAGACAAGGAGGGTATTCCCCCCGATCAACAACGACTCATCTTTGCTGGTA 161 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || |||||||| || ||| || |||||||||||||||| || || || || | | Sbjct 162 AGCAGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCAGAAAGAATCTACTCTGC 221 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| | || | || ||||| || Sbjct 222 ATCTGGTTCTTCGACTTCGTGGTGGAAT 249 >seq29103 Length=1863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || ||||| |||||| | || || ||||| || || | |||||| |||| Sbjct 1278 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 1219 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| || ||||| || || || || ||||| | Sbjct 1218 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 1159 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||| || || | || ||| | || || | || ||||||||||||||| Sbjct 1158 ATCTT-GCCGG-AAGCAGCTTGAGGACGGCCGCACTCTTGCAGACTACAACATTCAAAAG 1101 Query 27177 GAGTCGAC-CTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| | | || |||||| | ||| | || ||||| || Sbjct 1100 GAGTCGACGCGTCCACTTGGTTCTTCGTCTCCGAGGTGGAAT 1059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434210026656000