Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq31280 102 9e-17 seq49234 95.1 1e-14 seq35804 86.0 7e-12 >seq31280 Length=10079 Score = 102 bits (112), Expect = 9e-17 Identities = 304/465 (65%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 147730 GGGCTGAATAATGTGATGTAGTCATTCTTAATAAGACGTTCTAACATCAGGTCATTAATC 147789 ||||| || | ||||||| || ||| | || || | |||||| | || | | Sbjct 1288 GGGCTAAACAGCGTGATGTCCTCGCCCTTCAGCAGGCGCTGGTACATCATTTTGTTGAGC 1347 Query 147790 TGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTTTTTCAGA 147849 || || || || || | |||||| | ||||| | || ||||| ||||||||||| Sbjct 1348 TGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGG 1407 Query 147850 ACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCACCACCA 147909 || | ||| |||| ||||| | |||||| || |||||| ||| || ||||| || ||| Sbjct 1408 ACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCA 1467 Query 147910 CGTACACCACCTTGGGAACATGATTTAACAGAAG-CTTGAATAGTTTTCCAGAATGGAAT 147968 || || || || || ||||| ||||| || | | || ||| | || |||| || || Sbjct 1468 CGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTG-CTTGTAGAACGGGAT 1526 Query 147969 CACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAGAACCTTCTGCACGAATCATACC 148028 || || || | ||||||| | |||| || || || || ||| Sbjct 1527 ACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATACGACC 1586 Query 148029 AGCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTAATGATTGAAGCATTTGTGGT 148088 ||||||| ||||||||| || |||| | ||| || | || ||| | | ||| Sbjct 1587 CGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT---AGCGCTGGAGGT 1643 Query 148089 ---ATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACTCGAGAATTGACG 148145 || || |||||||| || |||| |||||| | ||||| ||| ||||| Sbjct 1644 CGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGACG 1703 Query 148146 AGTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAAT 148190 || || ||||| || || | ||| ||||| || ||||| || || Sbjct 1704 GGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGAT 1748 >seq49234 Length=879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 64958 TTTATTGTAGAAGAAAGTGACATGACCAGAACCCAAGATGAAGAACTCAGAGATTTTGAA 65017 |||||| ||||| || || |||||||| | ||| || ||| || | |||||| || Sbjct 363 TTTATTATAGAA-AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAA 420 Query 65018 GTCACGAACCTTTTTACCATTTTGAACATGCTTACGAACGGCACCAAACACACGAGGCAA 65077 ||| | ||||||| ||| || ||||||||||| ||||| || ||||| ||||| Sbjct 421 ATCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAA 480 Query 65078 TTCACGATACTCAGCCATCAAGTGTTGGTCTGCAAGTTC 65116 |||||| || |||||||| | |||||||| || | ||| Sbjct 481 TTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTC 519 >seq35804 Length=4990 Score = 86.0 bits (94), Expect = 7e-12 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 139186 CCATTTGTTCCATTTTTAAAGCCAACGCACATAGGCAGGCCTGAAGCAATTTCACGGTGT 139245 |||| || || ||||| |||||||| ||| | || ||||| || || |||||||| Sbjct 2899 CCATCAGTCCCGTTTTTGAAGCCAACCGGCATGGAGAGCCCTGACGCCATCTCACGGTGC 2958 Query 139246 GTCTGACTCTCGGTTGTACGAGCGCCGATTGCGACCCAAGAGAAAATACCTGTAAGATAC 139305 || || || |||||||| || ||||| || ||| ||| | | | |||||| Sbjct 2959 GTTTGCGATTCCGTTGTACGCGCACCGATCGCCGACCAGCTGAAGAGATCGCCCAGATAC 3018 Query 139306 TTAATCGTGAATGGGTCCAACACTTCAGTCGCTAGTGGAAGGCCTAAGCTTAATAGTTCT 139365 | || || |||| | |||| || |||| || ||||| | | | || | | Sbjct 3019 TGTGGGCTGTTAGGATCCAGCGCTTCCGTAGCTAAAGGCAGGCCCATGTCGACCAGAT-T 3077 Query 139366 AAGCAA-AGTTCGCGAGCCATTTCGAGCCCACGGTTTATGTCAAATGAGCCATTCAATTC 139424 || || | ||| || || || | ||||| | || ||||||||| || || | Sbjct 3078 AACCAGCAATTCACGTGCAATGTGCAGCCCTGCTTCCATATCAAATGAGTTATCCATGTA 3137 Query 139425 TGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCAAAATAAACACG 139484 || ||||| || || || ||||| || || ||||| | ||||||||||| || || || Sbjct 3138 AGGATCGTTGATCAACCCCTTCCAGCCAACGGTTGTGCGGGGTTTCTCAAAGTAGACGCG 3197 Query 139485 CATAAC 139490 |||||| Sbjct 3198 CATAAC 3203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567403933164000