Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq100029 253 8e-63 seq47236 183 1e-41 seq43257 134 6e-27 seq18101 98.7 4e-16 >seq100029 Length=517 Score = 253 bits (280), Expect = 8e-63 Identities = 260/340 (76%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 6714 AGCAATTACCCTTGGGCCACCCATGTACTTTCCGTACTCTTCCGTTAACAACGTGAAGTA 6773 ||||||| || | ||||| || || || || || || | || |||||||| || || | Sbjct 517 AGCAATTCCCTGTCGGCCAGCCCTGGACCTTTCGCACCTTGCCATTAACAACATGCAGCA 458 Query 6774 ATCCCCAGCCAGGTGGTAAATCCTCAATTGAAATAATTCCCGGCTCACTAATAAAGAATC 6833 |||||||||||| |||||||| |||| ||| || |||||||| ||||| ||||||| Sbjct 457 ATCCCCAGCCAGCAGGTAAATCTTCAACGTTAATTATGCCCGGCTCGCTAATGAAGAATC 398 Query 6834 GCCAGTCGCCCATTCCAAGAGACGGATTTTTACGGAAACGCTTTTTTCTATCTGCCAACA 6893 ||||||||||||| |||| | ||| ||| | ||| |||||||||| || |||| | Sbjct 397 GCCAGTCGCCCATGCCAATATCCGGGTTTAGCCTGAATCGCTTTTTTCGGTCAGCCAGTA 338 Query 6894 AGTCAGCACGAGAACACTTCGCCTCTATCAGGCATGATGCTGAATTTCTGAATCCCATAG 6953 | || | || || || || || ||||||||||| || || ||| | |||||||||| Sbjct 337 AATCTGAGCGCGAGCATTTTGCTTCTATCAGGCAAGACGCGTTATTGCGAAATCCCATAG 278 Query 6954 CATCTGGCTGTTCTCCGGTACTGGTTACGGCTATAAAGCGGTCATGAAAGCAAACCTTGA 7013 |||||||||| || || || ||||| || || ||||| ||||| |||||||| ||||||| Sbjct 277 CATCTGGCTGCTCACCTGTGCTGGTGACAGCAATAAATCGGTCGTGAAAGCAGACCTTGA 218 Query 7014 ACCCGTTGCGCTTAAGGAACTTGTACGCAATCTGACAGAG 7053 | ||||| ||| | ||||| ||| |||||||| || || Sbjct 217 ATCCGTTACGCCTGAGGAATGAGTAAGCAATCTGGCAAAG 178 >seq47236 Length=1665 Score = 183 bits (202), Expect = 1e-41 Identities = 220/297 (74%), Gaps = 18/297 (6%) Strand=Plus/Minus Query 31753 GAGCTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCT 31812 || ||| || |||||||||| || |||| ||| |||||||| || ||||| || |||||| Sbjct 717 GAACTGAAGTTGGCAAACGCCACGATTAATGACATGCAGGTACGTCAGCGAGACGTTGCT 658 Query 31813 GCGCTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTG 31872 || || ||||| ||||| | | ||| ||||| ||||||| |||||||||| | || Sbjct 657 GCCCTCGATGCGAAATATACCAAGGAGTTAGCTGATGCGAACACTGAAAATGACAGGCTT 598 Query 31873 CGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACC 31932 || ||| | | || |||||| | || ||||| ||| | | || ||| Sbjct 597 CGCGCTAAGCTGGCTGCTGGTGGC---CGGGTGCGGGTCACAGGCGAATGTAA----ACC 545 Query 31933 GTGCGTGAAGCCACCGGCACCTCCGGC---GTGGGCAATGATGCCAGCGTCGAACTCTCT 31989 | ||| ||||| ||||||||| |||||||||| | | ||||||||||||| Sbjct 544 G-----GAATCCACC---ACCTCCGGCAGCGTGGGCAATGCAGGAACCGTCGAACTCTCT 493 Query 31990 CCAGTTGCTGGACGAAACGTTCTCGGTATCAGAGACGGAATCATCAGCGACCAGGCA 32046 |||||||||||| |||||||||| ||||| ||| ||||||||||||||||||| || Sbjct 492 CCAGTTGCTGGATCAAACGTTCTCAGTATCCGAGCCGGAATCATCAGCGACCAGTCA 436 >seq43257 Length=1618 Score = 134 bits (148), Expect = 6e-27 Identities = 191/266 (72%), Gaps = 7/266 (3%) Strand=Plus/Minus Query 30354 GCATGGGTGGAGAAAAACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGGATCGCG 30413 || ||||| || |||| | | | || |||||||| ||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 30414 TCATTCTGCCCGTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTAT---AAA 30470 |||||||| |||| ||||||||||||||||| || | || || ||||| || ||| Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 30471 CGAATTAATGCAGGCGATCGCCGGGGTGCATGCGAGGCGATTCGCTGGTGGATTAAAGAC 30530 | || | ||||||||||||| ||||||||| | | ||| | ||||| ||| Sbjct 754 CTAA---ACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGAC 698 Query 30531 GGTGGCAGAGACTGCCGTATCCGCTCAAATAACTGTTATGGTCAGGTATCCCGTCGCGAC 30590 || || | ||| ||||| || ||||| ||| |||||| || || || ||| || ||| Sbjct 697 GGCGGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGAC 638 Query 30591 CAGGAGAGTGCGCTGGCGTGCTGGGG 30616 ||||| | ||| | |||||||| Sbjct 637 CAGGAATCAGAGCTCACATGCTGGGG 612 >seq18101 Length=6460 Score = 98.7 bits (108), Expect = 4e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 31924 CCCGGTACCGTGCGTGAAGCCACCGGCACCTCCGGCGTGGGCAATGATGCCAGCGTCGAA 31983 |||| | |||||| | |||| ||||| || || |||||| | ||| | | ||||||| Sbjct 3150 CCCGTCAGCGTGCGCGCAGCCGCCGGCGCCGCCAGCGTGGACCATGCAGGAACCGTCGAA 3091 Query 31984 CTCTCTCCAGTTGCTGGACGAAACGTTCTCGGTATCAGAGACGGAATCATCAGCGACCAG 32043 |||| ||||| |||||||| |||||||||| |||||| ||| |||||| |||||| Sbjct 3090 CTCTATCCAGAAGCTGGACGCAACGTTCTCGACGTCAGAGCCGGCATCATCGCCGACCAA 3031 Query 32044 GCAGCACTG 32052 || || ||| Sbjct 3030 GCTGCTCTG 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200679208259600