Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq31280 197 1e-45 seq33108 163 3e-35 seq34305 113 5e-20 >seq31280 Length=10079 Score = 197 bits (218), Expect = 1e-45 Identities = 314/448 (70%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 128633 CATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACC 128692 ||||| || || | ||| ||||| || || | ||||| | ||||| | || ||||| Sbjct 1332 CATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACC 1391 Query 128693 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 128752 |||||| || || || | ||| |||| ||||||| ||||| || |||||| |||| Sbjct 1392 ACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAG 1451 Query 128753 TGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 128812 ||||| ||||| |||||||| ||||| || || |||||||| || ||||| |||||||| Sbjct 1452 CGTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTG 1511 Query 128813 CTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTC 128872 ||| |||| || ||| || ||||| |||||||| | ||| || Sbjct 1512 CTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAG 1571 Query 128873 TGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAAT 128932 || || || ||| || ||||||||||||||||| || | | |||||| ||| Sbjct 1572 CGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT 1631 Query 128933 TGACGCAGCAGCT-TCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATG 128991 | ||| | || | |||| || |||| || || || || | |||||| | || || | Sbjct 1632 AG-CGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGG 1690 Query 128992 AACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCT 129051 | || |||||||| || || ||||| || || ||||| ||||| || |||| || || | Sbjct 1691 AGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGATTT 1750 Query 129052 TTTTAGTAGAAACTGCATCATAGAAACG 129079 | || |||| ||||| |||||||| Sbjct 1751 TAAACGTGGAAATCGCATCGTAGAAACG 1778 >seq33108 Length=3479 Score = 163 bits (180), Expect = 3e-35 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| || || ||||| ||||| ||||| | |||||| || || ||||| Sbjct 2958 TCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGC 2899 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || || ||||||||||||||||||||||||||||| || || ||||| | || ||| Sbjct 2898 ACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCG 2839 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985 || ||| |||||||| ||||| ||||||||||| | |||||| |||||||| Sbjct 2838 TCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 >seq34305 Length=2218 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48804 TATAGTGCCTCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAG 48863 || |||| || || || ||||| | || ||||| ||||||| || || || ||| Sbjct 587 TAGAGTGACTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAG 646 Query 48864 TTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGC 48923 || ||||| || || ||||| ||||| || ||||| | ||| |||||||| || || | Sbjct 647 TTAAAGCGAACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTA 706 Query 48924 TCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCT 48983 || | ||||||| || |||| || || ||||||||| ||||| ||||| |||||| Sbjct 707 TCCATTGCGTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCT 766 Query 48984 TCAAT 48988 ||||| Sbjct 767 TCAAT 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531206985124000