Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq70435 253 8e-63 seq83684 96.9 1e-15 seq24152 96.9 1e-15 seq42261 93.3 2e-14 seq89998 82.4 3e-11 >seq70435 Length=537 Score = 253 bits (280), Expect = 8e-63 Identities = 328/448 (73%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 16076 TGCTCACTGCGACCGGCTCCGCCGAGAACGCGGCTGTCGCCTTCGAGGCGCTCCAAGACT 16135 || |||| || |||||| | | || || || ||||| || |||| ||||| || || | Sbjct 537 TGATCAC-GCCACCGGCAGCTCGGA-AAGGCAGCTGTGGCTTTCGCTGCGCTGCAGGAAT 480 Query 16136 TCGCGAAGAACACTCCCTACGGCCTGGCCCAGGCGACGGAAGGCTTCACCAAGCTCGTGA 16195 |||| ||| || || ||| |||||| ||||| |||||||||| |||||| |||| Sbjct 479 -CGCGGCGAAAACGCCGTACAGCCTGGAGCAGGCCGTTGAAGGCTTCAGCAAGCTGGTGA 421 Query 16196 ACCTGGGCCTGGAGCCCAGTGAGCGGGCGCTCATGTCGTACGGCAATACCGCCGCCGCCA 16255 |||| |||||| ||| ||| ||| || | || |||||||| |||||||| || | Sbjct 420 ACCTCGGCCTGACGCCATCCGAGAAGGCTCTGACCTCCTACGGCAACACCGCCGCAGC-A 362 Query 16256 TGGGCAAGGACATGTCCCAGATGATCGAGGCGGTGGCCGACGCCACCACCGGCGAGTTCG 16315 |||| || ||| | |||||||||||||| ||| |||| || ||||||||||||||| Sbjct 361 TGGGGAAAGACCTCAATCAGATGATCGAGGCCGTGTCCGATGCTGCCACCGGCGAGTTCG 302 Query 16316 AGCGCCTGAAGGAGTTCGGCATCAAGTCCAGCTCCGAGGGCGACCGCGTCAAATTCACGT 16375 ||||||||||||| |||||||||| ||| ||| |||||||| || | || | Sbjct 301 AGCGCCTGAAGGAATTCGGCATCACGTCGAGCCAGCAGGGCGACAAGGTGTCCCTGACCT 242 Query 16376 TCCGAGGTGTCACGACCGAGATCGGCAAGAACGCCGCCGAGATCGAGCAGTACCTGATGG 16435 |||| || ||||| || ||||| |||| |||| ||||| ||| ||||| ||| Sbjct 241 TCCGTGGCGTCACCACGACCATCGGGAAGAGCGCCAAGGAGATTGAGGGCTACCTCATGA 182 Query 16436 CCCTGGGCGAGAACGAGTTCGCCGGGGCCATGGAGAACCGGATGAACTCCCTGGACGGGG 16495 ||||||| | ||| |||||||| |||||||| | || || | |||||||| | Sbjct 181 ACCTGGGCCTGGTCGATTTCGCCGGCGCCATGGATCAGCGCGCAAAGACACTGGACGGAG 122 Query 16496 CCATCGCTGGCCTGGGCGACTCCTGGGA 16523 ||||| || ||||||||| | ||||| Sbjct 121 CCATCTCTAACCTGGGCGATACTTGGGA 94 >seq83684 Length=502 Score = 96.9 bits (106), Expect = 1e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| |||| | ||| | || || | ||| |||||||| |||||| | || | ||| Sbjct 322 AAGGCAGCGCTCATCATCATCGATGAATGCTCGATGGTGGATGAGCAGCTCGGCAAGGAC 263 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGG-CGACCCCGCCCAGCTGCCGCCCGT 32797 ||| || ||| || ||| | || | ||||| ||| |||| ||||| ||||| || Sbjct 262 CTGATGAGCTTTGGCACGCCTGTTCTGGTGCTGGGGCGATCCCGGACAGCTTCCGCCGGT 203 Query 32798 CATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCG 32857 ||| | || | ||||||| ||||| || | ||||| || ||| | || ||||| || Sbjct 202 ATCGGGCGGTGGTTACTTCACCGAGCAGGAGCCAGACTTTCTTCTGTCGGAAATCCATCG 143 Query 32858 ACAGGCCCGCGACAACCCGATCATCGAG 32885 ||||| ||||||||||| ||| || Sbjct 142 TCAGGCGAAGGACAACCCGATTATCCAG 115 >seq24152 Length=392 Score = 96.9 bits (106), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 5838 CACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCC-TGCGCCTGC 5896 || |||||| || || || || ||||||| ||||||||| ||| |||| ||| || Sbjct 162 CATCGGCCC-GCCGGCACCGGCAAGACCTACCTGGCCATGG-CCAAGGCCGTGCAGGCGC 219 Query 5897 TGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGA 5956 || || || | | || | || || || ||||||| ||||| || ||||| | ||| Sbjct 220 TGCAGACCAAGAACGTCAACCGGATCATCCTCACCCGCCCCGCGGTCGAGGCCGGCGAGC 279 Query 5957 AGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGC 6016 ||| |||| |||||||||||| | ||||||||| | |||||||| ||| || Sbjct 280 GGCTGGGCTACCTGCCCGGCACGCTCAGCGAGAAGATCGACCCCTACCTGCGGCCGCTGT 339 Query 6017 TGGACGCGGTGATCGACCTGGTCGGCCCG 6045 |||||| || |||| |||||| |||| Sbjct 340 ACGACGCGCTGCACGACATGGTCGACCCG 368 >seq42261 Length=2804 Score = 93.3 bits (102), Expect = 2e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 32353 CCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAGGGCATCGACGGCACCGTTC 32412 |||| || |||||||||||||| || || | |||||||||| |||||||||| || Sbjct 2476 CCGGCACCGGCAAGACCACGCTCGCGCG-CGTATCGCCGAGGATGTCGACGGCACGGTCG 2534 Query 32413 TCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAAGACGAAGGGCTGCCCGAACA 32472 | |||| |||| || || |||||||||| ||| || | ||||||||||| || Sbjct 2535 TGTTCGGCGCCTTCACAGGCAAGGCCGCCTCGGTCATGCGCGCCAAGGGCTGCCCTGACG 2594 Query 32473 CCGGCACCATCCACCAGCTGATCTAC 32498 | ||| |||||| |||||||||| Sbjct 2595 CATCCACGATCCACGCGCTGATCTAC 2620 >seq89998 Length=593 Score = 82.4 bits (90), Expect = 3e-11 Identities = 106/142 (75%), Gaps = 11/142 (8%) Strand=Plus/Minus Query 33288 GACGAGTTCGACTACGGCTACGCCCTGACCGTGCACAAGAGCCAGGGCTCCCAGTGGGAC 33347 ||||| |||||||||||||| || || ||||| || ||| ||||| || ||||||||| Sbjct 566 GACGACTTCGACTACGGCTATGCGCTCACCGTCCATAAGGCGCAGGGGTCGCAGTGGGAC 507 Query 33348 GACGT---GCTCGTCATCGACGAGTG--GTTCCGGAACGAT---CGCCAGCAGTGGCTCT 33399 |||| ||| || |||||||| | | || || ||| ||| ||| ||||||| Sbjct 506 CACGTCAGGCT-GT--TCGACGAGAGCTGGGCCTCAAGGATTCGCGCGAGCGCTGGCTCT 450 Query 33400 ATACCGCGCTGACCCGCGCCGC 33421 | ||||| | ||||||||||| Sbjct 449 ACACCGCCATCACCCGCGCCGC 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191191708224000