Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq31280 260 2e-64 seq33108 127 2e-24 seq36028 111 2e-19 seq41062 96.9 4e-15 seq51525 91.5 2e-13 seq34305 91.5 2e-13 seq107223 87.8 2e-12 >seq31280 Length=10079 Score = 260 bits (288), Expect = 2e-64 Identities = 893/1373 (65%), Gaps = 48/1373 (3%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGTTA 18367 |||| || ||||| ||| | || || || || |||||||| |||||| |||||| Sbjct 1741 TGCCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTCC 1682 Query 18368 AGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATT 18427 ||||||| || |||||||| || || || |||| | || ||| | || || | Sbjct 1681 TGATTGAATGTGGCGACAGCCTGGATTCCATCAACGCGACCTCCAGCGCTATTGTGAAAT 1622 Query 18428 ATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTC 18487 | || ||||||| ||||| ||||||||||| ||||| || || ||| || || | Sbjct 1621 ACGTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGCC 1562 Query 18488 AAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGA 18547 ||||| ||||||| || || ||| ||| || |||| || || ||||||| Sbjct 1561 CGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGA 1502 Query 18548 CTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATC 18607 | || || ||||| ||||| || ||||| || ||||| || || || || |||| |||| Sbjct 1501 CAGCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATC 1442 Query 18608 CTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATG 18667 | ||||||||||| ||| | |||| ||| | || |||||||| ||| ||||| || | Sbjct 1441 CGATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAG 1382 Query 18668 AAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAACGTT 18727 |||||| | ||||| | || || ||| | || |||| ||| |||||| | | || Sbjct 1381 GTAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAACAAAATGATGTACCAGCGCC 1322 Query 18728 TGGTTGCCGATGATTATGTAACTCTGTTCAGTC---CAGACGTTGCAGCCGGTCGCCTGT 18784 || | | || | | || ||||| || | ||||||| | | |||||| Sbjct 1321 TGCTGAAGGGCGAGGACATCACGCTGTTTAGCCCGTCAGACGTACC------TGGCCTGT 1268 Query 18785 ACGATTATTTCTTTGAAGATGAAG-CGAAGTTCAAAGAACTGT--ATGAAACGCTGGAAA 18841 ||||| ||||||| ||| | | |||| || || | || | | ||| | ||| Sbjct 1267 ACGATGCGTTCTTTGCCGATCAGGACGAATTTGAACG-TCTTTACACCAAATAC--GAAC 1211 Query 18842 AAGATCCTACGATTCGTAAGAAGCGTATCAAAGCGCGTGACATTTTCACGACTGCAATGA 18901 |||| | ||||||||| ||||| | |||||| || | ||| || ||| |||| Sbjct 1210 AAGACAGCAGCATTCGTAAGCAGCGTGTGAAAGCGGTAGATCTGTTCTCG-CTG--ATGA 1154 Query 18902 T---GGAAAGAGCTAACACTGGTCGCGTTTATATTCAGTTTG-TGACCAACGTTAACGAA 18957 | |||| | || || || ||| | || || ||| | ||||| || ||| | Sbjct 1153 TGCAGGAACGCGCCTCTACCGGCCGCATCTACATCCAGAACGTTGACC-ACTGCAACACA 1095 Query 18958 AACAGTCCTTTCGATGAACCTATTAAG---------ATGTCCAACTTGTGTGTTGAGATT 19008 |||| || || || | |||| | ||| ||| ||||| | || ||| Sbjct 1094 CACAGCCCGTTTGACGCCAGTATTGCGCCAGTGCGCCAGTCGAACCTGTGTCTGGAAATT 1035 Query 19009 TGTTTACCGACTTATCCAATC-ACGAAG--AATATCGAAGAATCCGAGATTGCTCTGTGT 19065 | || ||| | || || | || | || |||| | |||||||| || ||| Sbjct 1034 GCGCTGCCAACTAAACCGCTCAATGACGTCAACGACGAAAACGGTGAGATTGCGCTCTGT 975 Query 19066 ACTCTGTCGGCGTTCAATCTTGGTAAAATTGAAAGTCTTCATGATTTCGAAAAAGCTGCC 19125 || ||||| || || || |||||| ||||| || || | ||| | | || ||||| | Sbjct 974 ACGCTGTCAGCATTTAACCTTGGTGCGATTGACAGCCTGGACGATCT-GGAAGAGCTGGC 916 Query 19126 CGCG-TTGCTGTTCGAGCACTGGATAACCTGCTTGATTATCAAGAATATCCGATGGAAGC 19184 | || | ||||| || || |||||| ||||| |||||||| || || ||||| || Sbjct 915 CACGCTGGCTGTACGCGCGCTGGATGCACTGCTGGATTATCAGGATTACCCGATTCCGGC 856 Query 19185 AGCATTAAAAGGT---CTGAAACGTCGTTCATTAGGAATCGGTATTACCAACTTTGCTTA 19241 || ||| || |||||| | | || || || | | ||||||||||| Sbjct 855 CGCGCAGCGGGGTGCGATGGGTCGTCGTACGCTGGGCATTGGCGTCATTAACTTTGCTTA 796 Query 19242 TTATCTCGCGAAAAATTACGTGAAATATTCAGACGGTTCAGCTAATGAATTGGTTCACGA 19301 || || ||||| | |||| || || ||||| || |||| || ||| | Sbjct 795 CTACCTGGCGAAGCACGGCGTGCGCTACTCCGACGGCAGCGCGAATGGCCTGACGCACAA 736 Query 19302 AATGATGGAAGCATTCCAGTATTATCTGCTTAAAGCTTCGATGGAATTAGCAAAAGAGCG 19361 || | ||||| | ||||| || ||||| ||||| || | || | || ||||||| Sbjct 735 AACCTTTGAAGCCATTCAGTACTACCTGCTGAAAGCCTCAAATGAGCTGGCTAAAGAGCA 676 Query 19362 TGGTGCTTGTGAATATTTCCACAAAACGTCATATTCTCGCGGCGTTCTACCGATTGATCG 19421 || || || | ||| | |||| | ||| | | ||||| || ||||||||| Sbjct 675 AGGCGCCTGCCCGTGGTTCAATGAAACCACCTATGCACAGGGCGTCCTGCCGATTGATAC 616 Query 19422 ATACAAGAAAACTGTTGA--CAATCTTG--TTGATCCAGTGTATCGTATGGACTGGGAAG 19477 ||||||||| | | || | || ||| || || || | | ||||||||||| Sbjct 615 CTACAAGAAAGATCTGGATGCGAT-TTGCAACGAGCCGCTGCACC---TGGACTGGGAAA 560 Query 19478 CGCTTCGTGCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCAGCGCTGATGC 19537 | || || | | || | | | || || || ||||| ||| | || || ||||||| Sbjct 559 CCCTGCGCGAGCAGATTAAAACCCACGGCCTGCGCAACTCGACGCTTTCTGCCCTGATGC 500 Query 19538 CTTGTGAATCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCGCCTCGTCAGT 19597 | | |||| | || ||||| | ||| |||| ||||||||||| ||||| || Sbjct 499 CGTCTGAAACCTCGTCGCAGATTTCAAACGCCACCAACGGTATCGAACCGCCGCGCGGCC 440 Query 19598 TGCTGAGTGTAAAACAGTCTAAAGACGGTGTACTGAATCAGCTTGTTCCTGAA 19650 | ||| | ||| ||||||||||||| | ||| |||| | || || ||| Sbjct 439 ATATCAGTATTAAAGCGTCTAAAGACGGTATCCTGCGTCAGGTGGTGCCGGAA 387 >seq33108 Length=3479 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 125477 GTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAA 125536 || ||| | |||||||| ||||| | || || || || ||| ||||||||||| || Sbjct 2777 GTGCGCGTGGAAGGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAA 2836 Query 125537 GATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCA 125596 || || || ||||||||||| || ||||| || ||||||||||||||||| || ||||| Sbjct 2837 GACGCCGTGAAACATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCC 2896 Query 125597 GTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACG 125656 || || |||||| | |||| | ||||| ||| ||||| || || || |||||| Sbjct 2897 GTGCGCTTTAATTCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACG 2956 Query 125657 GAA 125659 ||| Sbjct 2957 GAA 2959 >seq36028 Length=2231 Score = 111 bits (122), Expect = 2e-19 Identities = 445/679 (66%), Gaps = 29/679 (4%) Strand=Plus/Plus Query 20127 TTCTTCTGGCGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTA 20186 |||||||||||||||||||| || || || | || ||| ||||| || | | Sbjct 12 TTCTTCTGGCGTCCTGAAGAAGTCGATGTCTCACGCGATCGCATCGACTACCAGGCCCTG 71 Query 20187 CCAGAACATGAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACC 20246 || || |||||||| |||||||| | ||| |||| || |||| ||||| || | Sbjct 72 CCCGATCATGAAAAGCATATCTTCATCAGCAACCTGAAATACCAGACGTTACTGGACTCG 131 Query 20247 GTTCAGGGACGTGCTCCTAACACTGCTTTTATGTCCATCGTATCTGAT---GTAACACTT 20303 |||||||||| || ||| || | || | | | || ||| | ||| | Sbjct 132 ATTCAGGGACGCAGCCCGAACGTGGCACTGCTGCCGCTGATCTC-GATTCCGGAAC--TG 188 Query 20304 GACACATGGATTCCTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACAC 20363 || || ||||| |||||||||||||| || || |||||| ||| || || || ||| Sbjct 189 GAAACCTGGATAGAAACCTGGGCGTTCTCCGAAACGATCCACTCTCGCTCGTACACCCAC 248 Query 20364 ATTATGCGCAACGT-GTACGAA-GATCCGTCCAAGATCTTTGACGAAATCGTTCTTGATT 20421 || || |||||| | || ||| |||||||| | | |||||||| ||||| | | Sbjct 249 ATCATTCGCAACATCGT--GAACGATCCGTCTGTGGTGTTTGACGATATCGT-CACCAAC 305 Query 20422 CTGCA-ATCATGAAGCGTGCTGATGCTGTTACCCGCTATTACGACCAACTGATTAACGCG 20480 | ||| || || |||||| | | | | || ||||| | |||||| | | Sbjct 306 CAGCAGATTCTGGCGCGTGCGCAGGACATCTCTAAGTACTACGATGACCTGATTGA---G 362 Query 20481 ACCACTGATTATCATCATTT-CTGTAATAACTTTACAGCAGAGACGGAAGTTAATGAAAA 20539 | ||| | || ||||| ||| || | || ||| | || |||| || Sbjct 363 ATGACTAACTACTGGCATTTGCTGGGTGAAGGT-AC-GCATC-----AGGTCAATGGTAA 415 Query 20540 TTATAA-ACGTTTGATGTTGCGAGATATTAAAAAGAAACTGTATCTGTGTATGCACGCCG 20598 | | ||| || |||| ||| | | |||||| | ||||| | || || || Sbjct 416 GTCCATTACGGTTAATGT-GCGCGCGCTGAAAAAGCAGTTGTATATTTGCCTGATGAGCG 474 Query 20599 TTAACGCACTGGAAGCAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCAG 20658 | || || |||||||| || || ||||| || ||||| ||| | ||||| ||||| | Sbjct 475 TCAATGCGCTGGAAGCGATCCGCTTCTACGTCAGCTTTGCCTGCTCTTTTGCGTTTGCTG 534 Query 20659 AA-GATAAGAAAATGGAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAA 20717 | || || | ||||||||| || ||||| || |||||||| || || ||| Sbjct 535 AGCGAGAACTGA-TGGAAGGCAACGCCAAAATCATCAAGCTGATTGCACGCGACGAAGCT 593 Query 20718 CTGCACTTGAAAGGCACACAATATATGCTGCGTATTTGGCAGCAA-GGTAAAGATGATCC 20776 |||||| ||| ||||| || | |||||| | | || ||| ||| |||| ||||| Sbjct 594 CTGCACCTGACCGGCACCCAGCACATGCTGAATCTGCTGC-GCACCGGTGAAGACGATCC 652 Query 20777 TGAAATGATCGAAATTGCC 20795 |||||||| ||||||||| Sbjct 653 TGAAATGAAAGAAATTGCC 671 >seq41062 Length=2478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/317 (67%), Gaps = 7/317 (2%) Strand=Plus/Plus Query 20566 TTAAAAAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAGCAATTCGTTTCT 20625 ||||||||||| | | || ||| | || | ||||| || |||| |||||||||| Sbjct 813 TTAAAAAGAAATTATGGCTTTGTTTAAACAGCATTAACATTCTTGAAGGTATTCGTTTCT 872 Query 20626 ATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATGGAAGGCAGTGCTA 20685 ||||||| ||||| || | | |||||||| || | ||||||||||||| ||||| Sbjct 873 ATGTTTCATTTGCATGTTCATGGAGTTTTGCAGAGAATGA-AAAATGGAAGGCAATGCTA 931 Query 20686 AAATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGCACACAATATATGC 20745 | || || ||||| ||| ||||||||| | | |||||| | || || ||| Sbjct 932 AGATCATTCGTCTAATTTGTCGTGATGAAAATATTCACTTGGGTGCAACCCAGATGATGT 991 Query 20746 TGCGTATTTGGCAGCAAGGTAAAGATGATCCTGAAATGATCGAAATTGCCAAAGAGTGTG 20805 | ||| | | | ||||| ||||| || | ||||||| |||| ||| Sbjct 992 TACGTTTAATGAA------AAAAGAAGATCCAGACTTTGCAAAAATTGCAGAAGAATGTT 1045 Query 20806 AAGAAGAAGCTGTTAAATTGTTCTTGGAAGTTGCCGAACAAGAAAAAGAATGGATCGATC 20865 | || |||| | || ||||| |||| | | |||| ||| |||||||| ||| Sbjct 1046 ATGACGAAGTTCAAGAAATGTTCATGGATGCAATCAAACAGGAAGAAGAATGGGCTGATT 1105 Query 20866 ATCTGTTTAAATATGGA 20882 | | |||||| ||||| Sbjct 1106 ACTTATTTAAAGATGGA 1122 >seq51525 Length=844 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 122093 ATGCGGTAGTAACTCAGTTGGTAGAGTGCCGTCCTTCCAAGTCGGATGTCGCGAGTTCGA 122152 ||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 533 ATGCGAGTGTAGCTCAGTTGGTAGAGCGCCGTCCTTCCAAGTCGGATGTCGTGAGTTCAA 474 Query 122153 ATCTCGTCTGCCGCTCCAAA 122172 ||||| | ||||||||| Sbjct 473 ATCTCATTACTCGCTCCAAA 454 >seq34305 Length=2218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 125483 ATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCA 125542 ||||||||||| |||||||| ||||| || || |||| || |||| | | || ||| Sbjct 771 ATTGAAGGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCA 712 Query 125543 GTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGT 125602 | | | ||||| ||||||||||| | ||||| || ||||| || ||||| ||||| Sbjct 711 ATGGATAACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGC 652 Query 125603 TTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTAC 125655 ||||| | | || || |||||| |||||| || | || || ||||| Sbjct 651 TTTAACTCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTAC 599 >seq107223 Length=315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 125495 CAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTAAAACATCCT 125554 || ||||| ||||| || || | |||||||| ||| ||||| | | || || Sbjct 80 CATCATCTGAATGTGAACGTGTTTGATCGTGAACAACTTATGGATGCGATGGAGCACCCA 139 Query 125555 GAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGTTTTAATGCATTG 125614 ||||| ||||| ||| ||||||||||||| || |||||||| ||| |||| | | || Sbjct 140 GAAAACTATCCACAATTGACCATTCGTGTATCCGGTTATGCTGTTAACTTTATTAAACTG 199 Query 125615 ACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTT 125652 ||||| || || || | || || ||||| || ||||| Sbjct 200 ACTCGTGAGCAACAACTTGATGTGATCAACCGTACGTT 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581786868740000