Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028776.1 Length=59670 Score E Sequences producing significant alignments: (Bits) Value seq36477 194 6e-45 >seq36477 Length=1037 Score = 194 bits (214), Expect = 6e-45 Identities = 537/816 (66%), Gaps = 8/816 (1%) Strand=Plus/Minus Query 15562 GACCGTCAGACTGTTGACCCATTCATGTTAAAACATTGTCCTTCCTGGAAGGAGGATATG 15621 ||||| ||||| | ||||||| | | | || || || || |||||| ||| ||| Sbjct 1004 GACCGCCAGACAGCAGACCCATACCTTCTGCAAAATGCGCCATCATGGAAGCCGGACATG 945 Query 15622 ATTGGTAAGGGTATTGCGTGGCTACGTTTAAGCTTAAAGTTTGATGCTGAAAAATTCCCA 15681 || |||||||| || ||| | || | | | | |||||||||||||| |||||||| Sbjct 944 ATCGGTAAGGGCATCAGTTGGTTGCGGGTCACCCTTAAGTTTGATGCTGAGAAATTCCCG 885 Query 15682 TCCGGTTTGCCAAACGTCAAGGTGTTGAAAAAG--GGACGTAGAGTTTATGACCCACGTT 15739 || || | |||||| ||| || ||| || |||||| ||||||||||| | Sbjct 884 TCAGGCATTCCAAACATCACCGT--TGATAAGCTCGGACGTCAGGTTTATGACCCGAGAA 827 Query 15740 CCGGTCAAACTGTCTTTAGCGATAACGCTGCTCTTGTTATTCTTGATTATTTCCGCACGT 15799 |||| || ||| | | ||| |||| || || || ||||| || |||| | | | | Sbjct 826 CCGGGCAGACTCTTTACAGCAATAATGCAGCCCTGTGCATTCTGGACTATTACAGGAACT 767 Query 15800 A-TTTAAAGCGCAAGGACGAGAATATTAACTGGGACCAATTCAAGGAAGCTGCTAACATC 15858 | |||||| || ||| || |||||||| || || |||||||||| ||||| Sbjct 766 ACCTTAAAGTGC-CTGACTCAGCCATCAACTGGGATCAGTTTCAGGAAGCTGCAAACATT 708 Query 15859 TGCGACGAGTTTGTAACTAATGCGGATAACACTACGGAAAGACGCTACCGCATTAACGGT 15918 | || ||| |||| || | | | | || || || |||||||| |||||||||| Sbjct 707 TCGGATGAGATTGTCACAAGCACTGGTGACCAGACAGAGCGACGCTACACCATTAACGGT 648 Query 15919 GAGTTTGAAGTGGACGAAGCACCTGCTAAGATCCTTGATGCTATGCTTGAAGCTTGCGGC 15978 || || || | |||| || | || || || || ||||| || ||| Sbjct 647 GAATTCGACCTTAGCGAAAATAAAGCCAGCATTCTCGAAGCGATGCTGTCTGCCTGCTCG 588 Query 15979 GGGGAACTAACCTATATTGGCGGTAAGCATGGTCTGTTAGTTGGTGCGTATTACGGTCCA 16038 || ||| || || || | ||| |||||||| | | |||||||| ||||| ||||| Sbjct 587 GGAGAAGCGACATACATAGCCGGAAAGCATGGGATTCTCGTTGGTGCTTATTATGGTCCG 528 Query 16039 GCCACCATGACTTTGGATGAAAG-CTGCATTGCTGGGGATATCAAAATAATCCCTGAGAC 16097 || || | | ||| || | || |||| || || ||| | ||||| |||||| Sbjct 527 GCAACAGAGGAAATAACTGAGAGTCAGC-TTGCGGGTGACATCGAGATAATGCCTGAGGT 469 Query 16098 GTCTTATAAAGAGCGTACCAATACCATTACAGGTACATTCGTCGACCCGAAGCAAACATA 16157 |||| | ||||| || || || | || || || || |||||| | |||| ||| Sbjct 468 GTCTCAGGCTGAGCGAGTTAACACAATAAAGGGAACGTTTGTTGACCCGCAACAAAGATA 409 Query 16158 CGCTGAAGCAGATTTCCCTCCAGTTGTGGTTAAGGAATGGGTGGAAAAAGATGGCGGTGA 16217 | || | ||||||||| | || ||| || ||||| | | ||||||||| || Sbjct 408 TACAGAGGTAGATTTCCCGCAGGTATCGGTATCAGACTGGGTAGCAGAAGATGGCGTGGA 349 Query 16218 AATAACGCAAGACATGGATTTCCGCTTTGTTACAAGTGAATATCAAGCTCAACGTCTTGC 16277 || | || ||| || | | |||||||| || |||| || ||||||||||| || Sbjct 348 GATTTCACAGGACCTGAAACTGCGCTTTGTAACTTCGGAATTCCAGGCTCAACGTCTCGC 289 Query 16278 TAATATTATTTTACGTCGTAAGCGTGTTGGTCGAACAATTGAAGTGCCGTGTAACATGAA 16337 | |||| | | || | || ||| ||||| || | || | | ||| ||| Sbjct 288 TGATATCAAGCTCAAGCGCACCCGCGTTTCGCGAACCATGAACGTTACTTTAAACCTGAG 229 Query 16338 GGGGTATAAATTCCGCCCCGGCATGTATGTCAACGT 16373 || ||||||| ||| || |||||||| ||||| || Sbjct 228 CGGCTATAAATACCGTCCGGGCATGTACGTCAAAGT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190527138115200