Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq33108 178 1e-39 seq31280 131 2e-25 seq49234 102 9e-17 seq34305 98.7 1e-15 seq50823 82.4 8e-11 >seq33108 Length=3479 Score = 178 bits (196), Expect = 1e-39 Identities = 149/183 (81%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 ||||| || || ||| | ||||||||||| |||| |||||||| |||||||| || || Sbjct 2786 GAAGGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTG 2845 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 || ||||| || || ||||||||||||||||| ||||| ||||| ||||| || |||||| Sbjct 2846 AAACATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTT 2905 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098 || || ||||| || ||||| ||||| ||||| || || |||||||| || || ||||| Sbjct 2906 AATTCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAGTTTA 2965 Query 102099 TAA 102101 ||| Sbjct 2966 TAA 2968 >seq31280 Length=10079 Score = 131 bits (144), Expect = 2e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 22911 ATTGTTGAATATATCTCTAAACGCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCC 22970 ||||| |||| | || ||||||| || ||||||||||||| ||| || || || Sbjct 1631 ATTGTGAAATACGTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCG 1572 Query 22971 GAAGGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAA 23030 || |||| || ||||||| |||||| ||| ||| || || | || Sbjct 1571 CTGGGCAGCCCGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAG 1512 Query 23031 CATTTTCAGACTGCTGTTAAATCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACT 23090 || || ||||| || || ||||| ||||| |||||||| | ||||| ||||| || || Sbjct 1511 CACTTCCAGACAGCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGAC- 1453 Query 23091 GCT-TATTATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAA 23149 ||| | ||||| || |||||| ||||||| |||| || | || ||||||| ||| Sbjct 1452 GCTGTTCTATCCGATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCG 1393 Query 23150 AGGTGTAGAAGAAAACCGCATTCGTCATATGGATTATGGTGTTCAACTGAA 23200 ||||| |||| |||||| | ||||| ||||| || ||||| || || || Sbjct 1392 TGGTGTGGAAGGTAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAA 1342 >seq49234 Length=879 Score = 102 bits (112), Expect = 9e-17 Identities = 270/400 (68%), Gaps = 12/400 (3%) Strand=Plus/Minus Query 99814 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGACCGACCAACATCTTATGGCTGAG 99873 ||||| ||||||||| | || || ||| | | |||||||||||||||||||| Sbjct 549 ATGACCCGTATCAATCTCGTACCAGTACAAGAATTAGCTGACCAACATCTTATGGCTGAA 490 Query 99874 TATCGTGAATTGCCGCGTGTTTTTGGTATAGTTCGTAAACATGCGGCAAATGGTAAGCGG 99933 || ||||||||||| ||||| || ||| |||||||| || | | |||||| || Sbjct 489 TACCGTGAATTGCCACGTGTATTCGGTGCTGTTCGTAAGCACGTACAAGCTGGTAAACGA 430 Query 99934 GTTAAAGATTTTAAAATATCTTCCGAGTTTATTTTAGGCTCTGGTCATGTTACGTTCTTT 99993 | || ||||||||||| | | | | |||||| | ||||||||||| || || Sbjct 429 ATCAATGATTTTAAAAT-CAGTACTACCTACATTTAGGTACAGGTCATGTTACATT-TTC 372 Query 99994 TACGATAAGTTAGAATTTTTGCGAAAGCGTCAATCAGACATTA-TAACGGAATGCTTAAA 100052 || |||| ||| || ||| | ||| || |||| |||| | | |||||| | Sbjct 371 TATAATAAATTATTATATTTAC-AAAACGCCAATGTTCAATTAGTTAATGAATGCCTTCG 313 Query 100053 ACGTGGGTTTAGTATAAAAGATACTGAAGTTCCTGACATCAGCGATATTCCAGCAGAATG 100112 ||||| ||| || | |||||||| || ||||| || |||||||||| || Sbjct 312 TCGTGGTATTAAGATTACCAATACTGAATTTAACGACATATCAGACATTCCAGCAGCAT- 254 Query 100113 GAAAAATGATTATAATCCAT--GCAAATCAGCTATT-AAATTGAGTCAACAACGACTCGA 100169 ||||| | || ||||| || ||| | |||| || | || || ||| | Sbjct 253 TTGTAATGACTTTACTCCATCAGCCAATGAATTATTGTTATCGCGT--AC-ACGTTTGAT 197 Query 100170 TGAAAAAATTTTAATGAAGCCACACTGGTACAAGTATTAC 100209 ||| || |||| ||||||||| |||||||||| |||| Sbjct 196 TGAGAAGCTTTTGATGAAGCCAACTTGGTACAAGT-TTAC 158 >seq34305 Length=2218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 |||||||| || || || ||||| |||||||| || || |||| || || ||| Sbjct 771 ATTGAAGGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCA 712 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | | || || |||||||| ||| | |||||||| || || || ||||| |||||| Sbjct 711 ATGGATAACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGC 652 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAG 102092 |||||||| || || || ||||||| ||||| || | |||||||| ||| || Sbjct 651 TTTAACTCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTACCCAG 595 >seq50823 Length=3276 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 99814 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGACCGACCAACATCTTATGGCTGAG 99873 |||||||| || |||||| | ||| ||| || |||| |||||||| |||||||| Sbjct 308 ATGACTCGGATAAATTTAGTTCCGGTTCAGGAATTGGCCGATCAACATCTGATGGCTGAA 249 Query 99874 TATCGTGAATTGCCGCGTGTTTTTGGTATAGTTCGTAAACATGCGGCAAATGGTAAGCGG 99933 ||||||||||| || ||||| |||||| ||| | ||||| | | ||| || Sbjct 248 TATCGTGAATTACCACGTGTATTTGGTGCAGTAAGGAAACACGTTGATGCTGGGAA-AAT 190 Query 99934 GTTAAAGATTTTAAAATATCTTCCGAGTTTATTTTAGGCTCTGGTCATGTTACGTTCTTT 99993 |||| |||||||||||| | | |||| | || | || |||||||| || ||| Sbjct 189 ATTAATGATTTTAAAATAAGTAAAAGCTATATTCTTGGAACAGGACATGTTACCTTTTTT 130 Query 99994 TA 99995 || Sbjct 129 TA 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533797958192000