Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq49372 127 2e-24 seq49234 125 7e-24 seq62284 111 2e-19 seq50823 104 2e-17 >seq49372 Length=1062 Score = 127 bits (140), Expect = 2e-24 Identities = 311/466 (67%), Gaps = 24/466 (5%) Strand=Plus/Plus Query 63130 GTTTAGTTTAAATCGCTTAACATAATCATTAGGGCCTAGTTTTTTGTACATAGCCATAAC 63189 |||| ||| || || |||| |||||||| ||| | ||| |||||| |||| Sbjct 279 GTTTTCTTTGAAACGTTTAATATAATCATCTTCGCCAAATTTACGATACATAT---TAAC 335 Query 63190 AACAAAAT---AATTTTCCCAGGCAAATTCTCGGAACCAGCCTGATGTAATACTTGTGCA 63246 || || |||| ||||| | |||||||| ||||| ||||| |||||||| | || Sbjct 336 TACTGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACA 395 Query 63247 CACTTTTTCAAGAGCCATTTTAAAGCTTAACTCTGA-----ACCAGGTTTAAAGTTATTA 63301 |||||| | | ||| | |||| ||||||| | || || ||| |||||| Sbjct 396 CACTTTAACTAAAGCAGTAATAAA-----ACTCTGACGAGGATCAATTTCAAAATTATTA 450 Query 63302 GGAATCTGCGAACGCTCTAAAGCTAATACACATGCTTCTTCATATACACCAGCTAACTGA 63361 || || || ||||| ||||| || | ||||||| ||||||||||||||| ||| | | Sbjct 451 GGGATTTGTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACCCAATAATTTA 510 Query 63362 ATTTCTTTAGGTAGAGCCATGAACTTCTCTTTAGAAGTCATTACTTGAGAATCATCTTTC 63421 | ||| | | || | |||||| |||||| ||||| || | | | | || Sbjct 511 ACTTCATCGCTCTGTGCAAAGAACTTTTCTTTACTTGTCATAACGTCTGCACCTTCCACA 570 Query 63422 ATGTAATATTTGTATGCTGGCTGATCAATTAATGCAATGGCTTCATGAATTGTATCATGG 63481 || || | | ||||| || | |||| || | || ||||| ||||| ||||||||| Sbjct 571 ATATAGTTCATATATGCAGGTTTGTCAAGTACTTTTATCGCTTCGTGAATAGTATCATGG 630 Query 63482 TCGTATGTATAGATATCA---TCT---TTAAAGAATGCAT-CTTTAGAAACATCTAACAC 63534 || || | ||| || || ||| ||||||| || | | || || ||| | || Sbjct 631 TCATAAATGTAGTTAACACCGTCTCCACTAAAGAA-GCTTGCCTTTGACTGATCAAGTAC 689 Query 63535 AGGATGTGCATAACTCAAAGTTTCTTTTTCTCGAACTTCAACAATT 63580 ||||| |||| | | ||||||||||| || | || || |||| Sbjct 690 TGGATGCTTATAATTATACGTTTCTTTTTCACGCAATTTAAAAATT 735 >seq49234 Length=879 Score = 125 bits (138), Expect = 7e-24 Identities = 132/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 61216 TAAAAATTCTAATTTGTCATAGAAAAATGTGACATGACCTGTTCCTAAAATAAAGACATG 61275 |||| || |||||| | |||||||| ||| ||||||||||| |||||| | || | Sbjct 351 TAAATATAATAATTTATTATAGAAAA-TGTAACATGACCTGTACCTAAA-TGTAGGTAGT 408 Query 61276 AGAAATTTTAAAGTCTTTAAGTTTTTTACCATTTTGGACATGTTTACGCGCTGCACCAAA 61335 | |||||||| || || | | ||||||| ||| || || ||||| | ||||| || Sbjct 409 ACTGATTTTAAAATCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAA 468 Query 61336 GACTCGCGGCAATTCCCGATATTCAGCCATAAGATGTTGGTCGGCTAATTC 61386 || || |||||||| || ||||||||||||||||||||||| |||||||| Sbjct 469 TACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTC 519 >seq62284 Length=976 Score = 111 bits (122), Expect = 2e-19 Identities = 272/406 (67%), Gaps = 16/406 (4%) Strand=Plus/Plus Query 140175 GTTAATTTGAACACCATAATCTAGGTGGCGAATACG---GTTTTCATCAACACCTTTATT 140231 |||||| |||| || |||||||| || | | ||| | |||| | |||||||| Sbjct 87 GTTAATCTGAAAACAATAATCTAACTGTCTTACACGTGAGGTTTCTGTA---CCTTTATT 143 Query 140232 GTTCTTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGC 140291 || |||||||| | || | ||| | || |||||| | ||| ||| | ||| || Sbjct 144 ATT-TTCAGTACTACAAGATCTTCAAACTCGTAATGCCATAGTGGAAAGTGTACAGTTGC 202 Query 140292 TGCGCCACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGTTTTCC- 140350 ||| ||||| |||| || || |||||||| |||| ||||| | || | || Sbjct 203 TGCTCCACCTCGAACACCACCCTGAGAACAGGATT-AACAG----TTTTTGCCACTGCCG 257 Query 140351 --AGAA-TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAG 140407 |||| |||||| | |||||| || | |||||| | | ||| | |||||| | | Sbjct 258 ACAGAAATGGAATCAAGCCTGTGTGGACTGCATCACCACCACGAATTTCTGAACCTACTG 317 Query 140408 CACGATACATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTG 140467 ||||| ||| || ||||| | || || || |||||||| ||||||| Sbjct 318 CACGAACGCGACCATAATTTACACCTAGTCCAGCTTTCTTAGAAATATATTTCATGATTG 377 Query 140468 CTTTGTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAAC 140527 | || | ||| |||||||||| || || || || | | || ||||| ||||||| Sbjct 378 CAGAATTACCAGCACTAATACTGTCTAGGCTGTCTCCTACATTCATTACAACACAAGAAC 437 Query 140528 TGAACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGG 140573 |||| || ||||| ||||||| ||| |||||||| || || || Sbjct 438 TGAATTGACGAGTATTTGTACGTAAACCAGCCATAATAGGTGTTGG 483 >seq50823 Length=3276 Score = 104 bits (114), Expect = 2e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 61235 TAGAAAAATGTGACATGACCTGTTCCTAAAATAAAGACATGAGAAATTTTAAAGTCTTTA 61294 || ||||| || ||||| |||||||| | |||| || | | |||||||| || ||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 61295 AGTTTTTTACCATTTTGGACATGTTTACGCGCTGCACCAAAGACTCGCGGCAATTCCCGA 61354 | | |||| ||| | || ||||| | |||||||||| || || || ||||| ||| Sbjct 188 A-TATTTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 61355 TATTCAGCCATAAGATGTTGGTCGGCTAATTC 61386 ||||||||||| |||||||| ||||| ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTC 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517750538068000