Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq32038 230 7e-56 seq8276 208 2e-49 seq73294 147 7e-31 seq102312 141 3e-29 seq36676 134 4e-27 seq73638 122 3e-23 seq35294 95.1 4e-15 >seq32038 Length=828 Score = 230 bits (254), Expect = 7e-56 Identities = 332/464 (72%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 38866 GGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGAC 38925 ||||||||| ||||||||||| ||| | | | |||||||| |||| | Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCGGTGCGACGGC---GGGTGAAGTTCGCACTCGACTC 404 Query 38926 CGACACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGC 38985 ||||| ||||| || ||| | ||||||||| || |||| ||||||| || Sbjct 403 GTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGCGC 344 Query 38986 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTA 39045 | ||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 343 CGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGCCGGGTA 284 Query 39046 GTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTT 39105 || | ||| ||||| || || | ||| | ||||| ||||| ||||| ||||||| ||| Sbjct 283 GTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTGCGACTT 224 Query 39106 GTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTC 39165 |||||| ||||| ||| ||| || | ||| | ||||||| | | ||| ||| | Sbjct 223 GTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACAGCTTGTCGATCGCGGCCTG 164 Query 39166 CGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTC 39225 || | || | |||||| || || ||||||| || ||| |||| | || |||| Sbjct 163 CGGGAAGTCGCGCTCGAGCATGCCGGCCTGGAAGCCGGCGTACTGCTTGTCGAGCTCCTC 104 Query 39226 GGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGC--CTG-GCCCAGGCTGTAGCC 39282 ||||||||||||||| || || ||||| |||||| | | ||| ||| || | || Sbjct 103 CTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGGGTGAACCC 44 Query 39283 AGCGAGGATCTGCGC---CGCCTTCTGCACCTGCTCCTGGTAGA 39323 ||||| | |||||| ||| | |||||||||||||||| Sbjct 43 CGCGAGCACCTGCGCGATGGCCAT---GACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 208 bits (230), Expect = 2e-49 Identities = 282/390 (72%), Gaps = 10/390 (3%) Strand=Plus/Plus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTC---CTTCATCGCGTTGCGCGCCTTGATCCGGC 40091 ||| |||| || |||| || ||| |||| | || ||| ||| ||| || | || Sbjct 521 AGGACTTGCCCTGCACCCGCGCCACGTCGCGCACCACCGCCTTGGCGGCCATGGT---GC 577 Query 40092 CGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGA 40151 ||||||| |||||| ||| ||| |||||| |||| ||||| ||| | Sbjct 578 CGAAGGTGATGATCTGGCTCACCGCCTCGCGGCCGTACAGGTCGGCCACGTATTCGATCA 637 Query 40152 CCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTC 40209 || | |||||| || ||| |||||||| ||| | |||||||||||| | || || Sbjct 638 CCCGGTCGCGAC--CGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAGATCCGTTC 695 Query 40210 GGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCC 40269 |||||| ||||| |||||||| | || | | |||| |||||||||||||||||| Sbjct 696 GGGGTTGAGGAAGCGCTCGAACAGCAGGTCATAGGCCAGCGGATCGAGGTCGGTGATCTT 755 Query 40270 GAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCC 40329 ||| |||||||||||| || ||||| ||||||| || || || |||||| |||||| Sbjct 756 GAGTACGTAGGCGACCAGGGAGCCGGCACCCGAGCCCCGGCCGGGGCCGACCGGCACGCC 815 Query 40330 GTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT 40389 ||| | ||| ||||| ||||||||| |||| |||||||| ||||||||||| Sbjct 816 GTTGTTCTTCGCCCACTTGATGAAGTCCATCACGATGAGGAAGTAACCGGGGAAGCCCAT 875 Query 40390 CTGGATGATCATGTCGATCTCGTACTGGAG 40419 ||||||||| ||||||| |||| | | ||| Sbjct 876 CTGGATGATGATGTCGAGCTCGAAGTTGAG 905 >seq73294 Length=656 Score = 147 bits (162), Expect = 7e-31 Identities = 207/285 (73%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 40102 GATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGATGACCTCGCCGC 40160 |||||| || |||| ||| ||| || || || || || || ||||| ||||| ||| Sbjct 158 GATCTGCGCCACCTGTTCGCGCCCATATTTG-CGCTGCACATAGCGGATCACCTCTTCGC 216 Query 40161 GACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAG 40218 | || || | || ||||||||| || | ||||||||| |||||||| || ||||| || Sbjct 217 GGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGAG 274 Query 40219 GAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTA 40278 ||| || ||||||| ||| | || ||||||| ||||| ||| || ||| Sbjct 275 GAAGCGTTCGAAGAGCAGCGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGTA 334 Query 40279 GGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTT 40338 |||||||||||| || || |||| || || ||||| |||||| | | | || ||| Sbjct 335 GGCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCTT 394 Query 40339 GGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40383 ||||| |||||||||||| |||| ||||||||| | |||||| Sbjct 395 TGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq102312 Length=400 Score = 141 bits (156), Expect = 3e-29 Identities = 236/339 (70%), Gaps = 9/339 (3%) Strand=Plus/Minus Query 40927 GGCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGT 40986 ||||| ||||||||| || ||| ||||| ||| | | | || ||||||||||| Sbjct 390 GGCCTCGTCGTACTGGCCCAGGCGCAGCCGCGTCTGCACCTCCCCCGACGGGCAGCCCGT 331 Query 40987 GGTGACGATCAGGCCCTCGTTGTGCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTT 41046 |||| |||| ||||| | || || | || || ||| ||||||||| || ||| Sbjct 330 GGTGGCGATGAGGCCGGAGGAGTACTGCGAGAGCAGCTCGCGGTCCATGCGGGG---CTT 274 Query 41047 CCCGAGCAGGCCCTCTTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGT 41106 ||| | |||||| || | | | ||| | ||| | |||||||||| |||||| Sbjct 273 GTAGAGGAAGCCCTCGAGGCTGGCCAGGCTGCTCATCTTGAACAGGTTGTGCATGCCGGT 214 Query 41107 CTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAACG 41166 | |||||||||| || ||||| | ||||||||||| ||| ||| ||||||| | Sbjct 213 CGTGTTCTCGGCCAGCATCGTCATGTGGGTGTACGAGCCGGCACCCGAGACGTCGTCGCC 154 Query 41167 CTTCTGGTCCTCGG---TGCCCCACTGCACCCGCTCCTGATCGAAGCG---CGAGCCCGG 41220 || | | || |||||||| ||| ||| || || ||| || |||||| Sbjct 153 GGAGCGGCCGTTGGGGTCGCCCCACTTCACGCGCGTCTTGTCCTGGCGCGCCGTGCCCGG 94 Query 41221 AGCCATGTACGCCTCGATGCCGATGATCGGCTTGAcccc 41259 | || ||||||||||| ||||||||||||||||||||| Sbjct 93 CGTCAGGTACGCCTCGACGCCGATGATCGGCTTGACCCC 55 >seq36676 Length=975 Score = 134 bits (148), Expect = 4e-27 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 ||| |||| ||| | ||||||||||| ||||| || ||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAAC 40292 || || ||| || |||||||| ||||| || ||| ||| ||||| |||||||||| Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCA-TAGGCCACCAGCGAAC 724 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 |||| |||| || || || || || ||| |||||||| || || | ||| ||| | Sbjct 725 CGGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAA 784 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 | || |||| |||||||||| ||||| ||||||||| |||| Sbjct 785 ACTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq73638 Length=482 Score = 122 bits (134), Expect = 3e-23 Identities = 165/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 40199 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG-AGCCCGTGCTCCAGTGGATCGAG 40257 ||||||| |||||||| ||||| |||||||| | | || || | ||| || || || Sbjct 3 GACACGCT-TCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAG 61 Query 40258 GTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG-AGCCTCGCCCAGGAC 40316 |||||||||| || | || |||||||| || | |||| |||| || || || | Sbjct 62 GTCGGTGATCTGCAGCGCCCACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGGGC 121 Query 40317 CGACCCAC-ACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAG 40375 ||| | | ||| | | |||| |||| |||||||||||| |||| |||||||||| Sbjct 122 CGATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAG 181 Query 40376 GACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 40420 ||||||||||||| ||||||| |||| | |||| ||| |||| Sbjct 182 CCGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACTCGAGC 226 >seq35294 Length=305 Score = 95.1 bits (104), Expect = 4e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39212 TTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCC 39271 ||||||| | || ||||||||||| |||||||| |||||||||| ||| ||| |||| Sbjct 277 TTGGCCATCTCTTCAGGCTTCTTCTTACCCATGGCGCGACGCAGCATGTCCGCCCCGCCC 218 Query 39272 AGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGC 39331 || | ||||| | |||| ||| || || | ||||| |||||||| | ||| | Sbjct 217 AGCGTATAGCCGGACAGGACCTGGGCAATCTGCATGACCTGTTCCTGGTACAGGATAATG 158 Query 39332 CCGTACGTCGGGTCCAG 39348 ||||| ||||| ||||| Sbjct 157 CCGTAGGTCGGCTCCAG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160158201172200