Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq40411 107 3e-18 seq47353 84.2 3e-11 >seq40411 Length=1793 Score = 107 bits (118), Expect = 3e-18 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 125238 TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAA 125297 |||||||| ||| || || | || | ||||| ||| ||| || | || | ||| Sbjct 698 TAATCCCAGACGTCTTCCAGCGCCTTAAGGTTGTGCTGCACATTGGGATATTCGCCGTAA 639 Query 125298 CAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAAT 125357 ||||| ||||| || || | | || || | |||||||||||| ||||| || | Sbjct 638 CAGATAAAACCGCCATTGGAGAGTGGCGGATAGGGAGCTTCAAAATCGATTTTTTCGTAA 579 Query 125358 GGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTG 125417 || ||||| ||||| ||||| | || || ||| |||||||| ||||||| | Sbjct 578 GGATTCACCTTCTTCTCAACGTCCAGATGGAAGCTGTTGGTGTAATAACCTTTGTCGGTC 519 Query 125418 ATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGAT 125477 | ||| | | ||||| ||| | || || || |||||||| ||||||| | Sbjct 518 ACGCCTTTTACCACACCAAATTCAGCCGCATCCAGTCGGCAGAAACGGTCACATAAGTTT 459 Query 125478 TCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCGGT 125536 || || ||||||||||| || || || || |||||||| ||||||| || ||||| Sbjct 458 TCGCTGGGTGTACTGTAGAGGCTAAAGCCATAGCCCGTTTCCGCTTTCCAGGCGTCGGT 400 >seq47353 Length=5297 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 210229 ACACTGTTGAGCAGAAGATGTGTGCGCAAAAATGGGATGCAATCGACTTCGGTAAGTTGC 210288 |||||||||| || |||||||||| | ||||||||| ||| || | ||| ||| | | Sbjct 1950 ACACTGTTGAACAACAGATGTGTGCAAATCAATGGGATGAAATTGAATACGGCAAGCTAC 1891 Query 210289 CTTCTGTAGCGTCTGCTCGTTATCAACAAGCATTCGGTCGTAACGC--TTCAGCTCGTTA 210346 | || || || | | |||||| | || ||| | |||| | | ||||||| Sbjct 1890 CATCAGTTGCAAGTTCACGTTATTTGCCTGCGTTCAT--GAAACGTGATGAAACTCGTTA 1833 Query 210347 CACAAGC-TACATCGAGTCACTTCAAAAAGGTGAAGCGAAGATCAACGCTGGCGCATTGT 210405 | | || ||| | || ||||| |||||||||||| ||| | || ||||| ||||| | Sbjct 1832 C-CGTGCGTACTTGGAAGCACTTTCAAAAGGTGAAGCTAAGGTAAATGCTGGTGCATTAT 1774 Query 210406 TCCCATACGATGT 210418 ||||||| ||||| Sbjct 1773 TCCCATATGATGT 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792460773824000