Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq75989 98.7 4e-16 seq2902 96.9 1e-15 >seq75989 Length=485 Score = 98.7 bits (108), Expect = 4e-16 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 54584 ACCGCCAGCATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGC 54643 ||||| | ||||||||| | | |||| | || | |||||||||| ||| | ||| Sbjct 271 ACCGCGAAGATGCCGTTCATCTTCAAGCACCTGGCGGTGATGCCCGACGTGCATCTGGGC 212 Query 54644 AAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTC 54703 || ||| | |||||| || |||||| | ||||| ||||||| || ||||| Sbjct 211 AAGGGCTCGACCATCGGCAGCGTGATCCCCTCGGTGGGCGCGATCATCCCTGCTGCCGT- 153 Query 54704 GGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACCAC 54744 ||||| |||||||||||||| |||||||| || |||||||| Sbjct 152 GGCGTGGACATCGGCTGCGGGATGATCGCCGCGCGCACCAC 112 >seq2902 Length=689 Score = 96.9 bits (106), Expect = 1e-15 Identities = 333/508 (66%), Gaps = 36/508 (7%) Strand=Plus/Plus Query 54959 CAGCTCGGAACACTCGGCGGCGGCAACCATTTCATTGAACTGTGCCTCGACCAGCTCGAC 55018 ||||| || || |||||| |||||||| ||| | || ||| | |||| |||||| | Sbjct 192 CAGCTGGGCACCCTCGGCTCGGGCAACCACTTCGTCGAGGTGTCCTCCGACGAGCTCGGC 251 Query 55019 CGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACAAGATCGCGCAGAAA 55078 || || ||||||||||| || ||||| || || || || || ||| || | |||||| Sbjct 252 CGGGTGTGGCTGTTCCTCCACTCCGGCTCGCGCGGGGTGGGGAACCAGCTGGCGCAGCGG 311 Query 55079 CACATCAAGGCCGCCCAGAACGCCTGCG--AGGGC-----ATCGAACTGCCGTCCAAGGA 55131 |||||| || || ||| | || ||| | ||| ||| |||||| | || Sbjct 312 CACATCCGGGTGGCGCAGGA-GCAGGCGGCACGGCGGTTTTACGACCTGCCGGACCGCGA 370 Query 55132 TCTGGCGTACCTCACCGAAGGCACACCCCAATTCTACGAGTACCTACGT----GAACTGC 55187 || || |||||| || || || | ||| ||| ||||||| | || | Sbjct 371 CCTCGCCTACCTCGTGGAGGGGGAGCCGGAGTTCGACG----CCTACGTCGAGGCCCTCC 426 Query 55188 ATTGGGCGCAACGATTCG-CGTACTCGAACCGCGCCGAAATGATGGACCGGTTCG-CGCG 55245 |||||||| || |||| || ||| ||||||| || ||||||||||| ||| ||| Sbjct 427 TGTGGGCGCAGCGCTTCGCCGCCCTC-AACCGCGAGGAGATGATGGACCGCGTCGTCGC- 484 Query 55246 CGCATTCG-CGA-----ACTGGATCGGCACACCCGTCGACGACGTCTCAGCGTTCATCGC 55299 ||| ||| ||| | | | ||| || | |||| |||| || || Sbjct 485 CGCGCTCGCCGAGGCCCTCGGCCTGGGCGGGCCGGAGGACGTCGTC----CG-----CGA 535 Query 55300 CGAAACCATCAACACCCACCACAACTACACCGAGCAGGAAGAACACGGCGGCCGGTTCGT 55359 || || ||| | ||||||||||||||||| | || ||| ||| || || Sbjct 536 GGAGACGATCGGCTGCCACCACAACTACACCGCCCGCGAGACCCACTACGGGCGTGAGGT 595 Query 55360 GTGGCTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATCCCCGG 55419 |||||| ||||| ||||||||||| ||| | ||| || | || |||||| | || || Sbjct 596 GTGGCTGTCCCGC-AAGGCGCCATCAGCGCCCGCGAGGGCGAGCTCGGCCTCGTGCCGGG 654 Query 55420 CAGCATGGGCACCTGCTCATACGTCGTC 55447 |||||| | || ||||||||| Sbjct 655 GTCGATGGGCGACGCGTCCTACGTCGTC 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196409222587800