Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq33499 535 3e-147 seq33108 86.0 4e-12 >seq33499 Length=26748 Score = 535 bits (592), Expect = 3e-147 Identities = 619/834 (74%), Gaps = 0/834 (0%) Strand=Plus/Plus Query 93365 AATTCATATACTATTGTTTCTGATGGTACGGTTAAAACCCAAACATTTCTGGGTAAAGTA 93424 ||||| |||| || || |||||||| || ||||| ||||| ||| |||||||||| Sbjct 23267 AATTCCTATATCATCGTGCAAGATGGTACAGTAAAAACACAAACCTTTATGGGTAAAGTT 23326 Query 93425 GATCCTAACCCAGTATTACCTGGTTTCCATCTTGTAAACCCATTTGCATCTTTCGATACT 93484 ||||||| || ||| || || |||||| | || |||||||||||| || || ||| Sbjct 23327 AATCCTAATCCTGTAAAGCCAGGGTTCCATGTGGTTAACCCATTTGCAAGCTTTGAGACT 23386 Query 93485 TTTAGTACAAAAGATATTGCTGTAAAGTTAGATAAACTTCAGGTTCCTAGCCAGGATAAG 93544 || |||||||||||||| ||| | |||||| | || || || || ||||||||| Sbjct 23387 TTCAGTACAAAAGATATCAAAATAACATATGATAAATTGCAAGTACCGAGTCAGGATAAG 23446 Query 93545 TTTAAATCCACTGTTGACCTGACTGTTATGTTGCAGTTTGATGGTTCTAAGGCACCAATT 93604 |||||||| || || || |||| |||||||||||||||||||||||||||||||| || Sbjct 23447 TTTAAATCAACAGTGGATATGACCGTTATGTTGCAGTTTGATGGTTCTAAGGCACCTATG 23506 Query 93605 AACCGTATTAACGCAGGTACTCAGGATCAGGCGCTAGACAAGTATGTAACTGAAAAATTA 93664 ||||| ||||| ||||| ||||| || || || || || || ||||| |||| | Sbjct 23507 AACCGAATTAATGCAGGCACTCAAGAGCAAGCTCTGGATAAATATGTTGAGCAAAAGCTT 23566 Query 93665 CTGTCTACTATTCGTGAGTTTGGTAAGTCTGTACCTAAAGCACAAGATTTGTTTGATGCT 93724 | || ||| | || ||||||||||| || || || |||||||| |||||||| | ||| Sbjct 23567 TTATCCACTGTCCGAGAGTTTGGTAAATCAGTCCCGAAAGCACAGGATTTGTTCAACGCT 23626 Query 93725 AAAATTCAGGCTCAATTGCAAACTGCAATTCAACAGGAAGTTGAAGAGTATGCACGCCCA 93784 | |||||||| || ||||| | || | || ||| |||||| || ||||| || Sbjct 23627 GAGATTCAGGCGCAGTTGCAGGATTCAGTAAAAGCTGAAATTGAAGCCTACGCACGTCCT 23686 Query 93785 TATGGTTACACAGTTAAGCAGGTATTCCTTCAGGATATTACTCTGCCGCCGGTAATCATG 93844 |||||||| || || || | | ||| | || ||||| || |||| ||||||||| Sbjct 23687 TATGGTTATACTGTAAAAGAAATCTTCTTGCAAGATATCACCTTGCCTGATGTAATCATG 23746 Query 93845 GAACAGGTACAGAATACCAAAGTTCGTGAAGAACAGGTTAATGCTGCTAAAGCTGAACTG 93904 | |||||| ||||| || ||||||||||||||||||| || || | ||||| ||| Sbjct 23747 AAGCAGGTAACAAATACAAAGATTCGTGAAGAACAGGTTAACGCAGCACAGGCTGATCTG 23806 Query 93905 GCTCGTGTTGAACAGGAAGCACAGCAAAAAGTTAAACAAGCAGAAGCAGACCGTGAAGCT 93964 | || || | | ||| |||||||| |||||| | ||||| || || || ||||| Sbjct 23807 GACCGAGTAGCTAAAGAAACACAGCAAGCAGTTAAGAAGGCAGAGGCTGATCGAGAAGCC 23866 Query 93965 CGCAACAACCAAGCTATTGCCAATGAGCGTGACGCAGATGCCAAACTGTACGCAGCTAAG 94024 || || || |||| || || || || || |||||||| ||| | || || ||| | Sbjct 23867 CGTAATAATGAAGCCCAGGCAAACGAACGAGATGCAGATGCTAAATTATATGCTGCTCAA 23926 Query 94025 AAAGAAGCTGAAGCTAACGCCGCATTGCAACGTACCATTACTCCTGAGATGATTCGCTGG 94084 |||||||||||||||||| | ||||| || || ||||| ||||||||||| ||| Sbjct 23927 AAAGAAGCTGAAGCTAACAGTGTGTTGCAGAAAACAATCACTCCAGAGATGATTCGTTGG 23986 Query 94085 AAGCAACTGGAAGTTGAAATGATTCGTGCTCAGAAATACCAAGGTGGTGTACCGCAGACT 94144 || ||||| ||||||||||||| |||||| |||||||||||||||||||||| || || Sbjct 23987 AAACAACTCGAAGTTGAAATGAAACGTGCTGAGAAATACCAAGGTGGTGTACCACAAACA 24046 Query 94145 GTGGTTGGCACTGGCTATGATGGCCAAATGATCATGGATATGCGTAATAAATAA 94198 || |||| || ||| || || | |||| |||||| ||||| |||||| Sbjct 24047 GTTATTGGTGGTGACTACGAAGGTAAGTTGATTATGGATGCTCGTAACAAATAA 24100 >seq33108 Length=3479 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 106575 GAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCACAG 106634 ||||| || || ||| |||| || || || | | ||||| ||| || || | Sbjct 2786 GAAGGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTG 2845 Query 106635 AAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTTTT 106694 ||||||||||| || || || || | || || |||||||| || || || || || ||| Sbjct 2846 AAACATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTT 2905 Query 106695 AATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744 ||| | ||||||| |||||||||| ||||| ||| ||||| ||||| Sbjct 2906 AATTCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTAC 2955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356910713129600