Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq31280 168 7e-37 seq49234 147 2e-30 seq50823 116 4e-21 >seq31280 Length=10079 Score = 168 bits (186), Expect = 7e-37 Identities = 279/400 (70%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 143920 GTTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACCTTTGTTGTT 143979 ||| | ||| | ||||||||||| || || | ||||| | || ||||| |||||| Sbjct 1341 GTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTT 1400 Query 143980 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAGCAGTAGCAG 144038 |||||| || | ||| |||| ||||||| |||||| || ||||| | ||| || || | Sbjct 1401 TTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTG 1459 Query 144039 CGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGA 144098 |||||||||||| || || || ||||| ||||| || || |||||||| || || ||| Sbjct 1460 CGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGA 1519 Query 144099 ATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAA 144158 | || ||| ||||||||| |||| || || ||| | || || || | Sbjct 1520 ACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGA 1579 Query 144159 TCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAG 144218 | ||| |||| ||||||||||| || |||| |||| ||||| | || | | | | Sbjct 1580 TACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGG 1639 Query 144219 CAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATT 144278 || ||| || || | ||| |||||| |||||| | ||||| || || || | Sbjct 1640 AGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACT 1699 Query 144279 GACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGG 144318 |||||||||| ||||| |||| | ||| || || || || Sbjct 1700 GACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGG 1739 >seq49234 Length=879 Score = 147 bits (162), Expect = 2e-30 Identities = 157/203 (77%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 57994 AATGTAACATGGCCTGTGCCAAGGATAAAAGTAGGACTGATTTTGAAATCACGGACACGT 58053 ||||||||||| ||||| || | || | |||| ||||||||| |||||| || ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 58054 TTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGATATTCA 58113 |||||| || ||||||||||| |||||||| |||||||| |||||||| |||||| Sbjct 434 TTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCA 493 Query 58114 GCCATTAAGTGTTGGTCAGCCAATTCAGATACTAAGGTA--AGGTTGATACGAGTCATTT 58171 ||||| | ||||||||||| ||||| |||| |||| || |||||||| |||||| Sbjct 494 GCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTGATACGGGTCATTC 551 Query 58172 TTAA-TCTCCTGTAGTTGATAGG 58193 || |||||| || |||||| Sbjct 552 AAAATTCTCCTTTATAAGATAGG 574 >seq50823 Length=3276 Score = 116 bits (128), Expect = 4e-21 Identities = 144/193 (75%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 57988 TAAAAGAATGTAACATGGCCTGTGCCAAGGATAAAAGTAGGACTGATTTTGAAATCACGG 58047 ||||| || |||||||| ||||| ||||| ||| | | ||| ||||| |||||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 58048 ACACGTTTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGA 58107 | | ||| ||| | |||| || || | |||||||| || |||||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 58108 TATTCAGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAGGTAAGGTTGATACGAGT 58166 ||||||||||| | ||||| || ||||||| | || | | ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 58167 CATTTTTAATCTC 58179 |||||| ||| || Sbjct 306 CATTTTAAATATC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544669821756000