Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028872.1 Length=86252 Score E Sequences producing significant alignments: (Bits) Value seq66202 107 1e-18 seq34483 82.4 4e-11 seq31229 82.4 4e-11 >seq66202 Length=972 Score = 107 bits (118), Expect = 1e-18 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 85242 TTAACTCTAAAGGGTTTAAGGTACTGGATGAGCATATCGGACTTATCTATGGTGACTCTA 85301 ||||||||||||| | ||||| || ||| || | || | ||||||||||| || | Sbjct 672 TTAACTCTAAAGGTTACAAGGTTCTTGATACACACGTTGGTGTAATCTATGGTGATTCAA 731 Query 85302 TCACGCTGGAACGTGCAAACGAAATCCTGAAGCGTCTGTATGAAATGGGTTTTGCAAGCT 85361 |||| ||| |||| || | |||||| | | || || | | | ||||||||| Sbjct 732 TCACTCTGAAACGCGCCACTGAAATCTTTGAACGCTTGGAAGCTAAAGGTTTTGCATCAA 791 Query 85362 CTAACGTAGTGTTTGGTGTAGGCTCTTACACTTACCAGTACATGACTCGTGACACCTTTG 85421 ||| | || || ||| | || || |||||| | |||| || ||||||||||||| Sbjct 792 GTAATATTGTATTCGGTATTGGTAGCTATACTTACAACTACAATACACGTGACACCTTTG 851 Query 85422 CATTTGC-TGTCAAAGCAACTCTTGCAAGCATTGGTGGTAAAGAGATTATGCTTGCAAAA 85480 ||||| ||| ||||||||| | ||| ||||| |||| ||||||| || | ||| Sbjct 852 GTTTTGCATGT-AAAGCAACTGGTTCAATCATTGATGGTGAAGAGATCCTGGTGAGTAAA 910 Query 85481 GACCCTAAAACAGAT 85495 || || ||||| ||| Sbjct 911 GAGCC-AAAACTGAT 924 >seq34483 Length=1392 Score = 82.4 bits (90), Expect = 4e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 26829 GCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTCGAA 26888 || ||||||| ||| ||||||||||| ||| ||||||| ||| || ||||||||||| Sbjct 1235 GCGCCCTTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 1294 Query 26889 TCCTGTAGGGTGTGCCAATT 26908 |||||||||| | |||| || Sbjct 1295 TCCTGTAGGGCGCGCCACTT 1314 >seq31229 Length=3871 Score = 82.4 bits (90), Expect = 4e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 26829 GCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTCGAA 26888 || ||||||| ||| ||||||||||| ||| ||||||| ||| || ||||||||||| Sbjct 128 GCGCCCTTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 69 Query 26889 TCCTGTAGGGTGTGCCAATT 26908 |||||||||| | |||| || Sbjct 68 TCCTGTAGGGCGCGCCACTT 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275443491397900