Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq31280 158 1e-33 seq49234 138 1e-27 seq50823 125 8e-24 >seq31280 Length=10079 Score = 158 bits (174), Expect = 1e-33 Identities = 300/439 (68%), Gaps = 2/439 (0%) Strand=Plus/Plus Query 142858 GTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCAACGCCTTTGTTGTT 142917 ||| | ||| | ||||||||||| ||||| | ||||| | || || || |||||| Sbjct 1341 GTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTT 1400 Query 142918 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAGCAGTAGCAG 142976 |||||| || | ||| |||| ||||||| |||||| || ||||| | ||| || || | Sbjct 1401 TTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTG 1459 Query 142977 CGCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGA 143036 |||||||||||| || || || ||||| ||||| || || |||||||| ||||| ||| Sbjct 1460 CGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGA 1519 Query 143037 ATGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAA 143096 | || ||| ||||||||| ||||||| | ||| | || || || | Sbjct 1520 ACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGA 1579 Query 143097 TCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAG 143156 | ||| |||| |||||||||||||| |||| |||| || | | || | | | | Sbjct 1580 TACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGG 1639 Query 143157 CAGTTTTATTAATTGATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGAACTAAACT 143216 || || || || | ||| ||| || |||||| | || || || || |||| Sbjct 1640 AGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACT 1699 Query 143217 GACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTGACGGGTGC 143276 ||||||| || ||||| | || | ||| || || || |||| || || | | ||| Sbjct 1700 GACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTGG 1759 Query 143277 TAACAGCATCATAAAAACG 143295 || ||||| || ||||| Sbjct 1760 AAATCGCATCGTAGAAACG 1778 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 141917 GGAACTACCTGACGGAAGTTACCTTCTTTAGATTCTTTAATACTTACTGGGCCACGCGGA 141976 || || |||||||| | | |||| |||||||| |||||||||| | |||| ||||| Sbjct 391 GGCACCACCTGACGCAGGATACCGTCTTTAGACGCTTTAATACTGATATGGCCGCGCGGC 450 Query 141977 GGTTCGATACCGTTGGTAGAGTTTGAAACCTG 142008 ||||||||||||||||| | |||||||| ||| Sbjct 451 GGTTCGATACCGTTGGTGGCGTTTGAAATCTG 482 >seq49234 Length=879 Score = 138 bits (152), Expect = 1e-27 Identities = 155/203 (76%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 58468 AATGTAACATGACCTGTGCCAAGGATAAAAGTAGGACTGATTTTAAAATCACGAACCCGT 58527 ||||||||||||||||| || | || | |||| |||||||||||||||| | ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 58528 TTACCATTAGCAACATGCTTACGAACTGCACCAAAAACACGTGGTAATTCACGATATTCG 58587 |||||| || ||||||||||| ||||| || |||||||| |||||||| ||||| Sbjct 434 TTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCA 493 Query 58588 GCCATTAAGTGTTGGTCAGCCAATTCAGATACTAAAGTA--AGGTTGATACGAGTCATTT 58645 ||||| | ||||||||||| ||||| |||| ||| || |||||||| |||||| Sbjct 494 GCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTGATACGGGTCATTC 551 Query 58646 TAA--TCTCCTGTAGTTGATAGG 58666 || |||||| || |||||| Sbjct 552 AAAATTCTCCTTTATAAGATAGG 574 >seq50823 Length=3276 Score = 125 bits (138), Expect = 8e-24 Identities = 143/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 58462 TAAAAGAATGTAACATGACCTGTGCCAAGGATAAAAGTAGGACTGATTTTAAAATCACGA 58521 ||||| || |||||||| ||||| ||||| ||| | | ||| |||||||||||| | Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 58522 ACCCGTTTACCATTAGCAACATGCTTACGAACTGCACCAAAAACACGTGGTAATTCACGA 58581 | ||| ||| | |||| || || | ||||||||||| |||||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 58582 TATTCGGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAAGTAAGGTTGATACGAGT 58640 ||||| ||||| | ||||| || ||||||| | || | || ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 58641 CATTTTAA 58648 |||||||| Sbjct 306 CATTTTAA 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544497303204000