Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028882.1 Length=84583 Score E Sequences producing significant alignments: (Bits) Value seq29230 100 2e-16 seq27013 95.1 7e-15 >seq29230 Length=2423 Score = 100 bits (110), Expect = 2e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 47152 AGATCGACAGGGACAGCGCCCTGGAGTCCTGCTCCTGGGGGATGTTCCAGATCATGGGCT 47211 ||||||| || | |||| |||||||| ||| |||||| |||||||| ||||||||| Sbjct 1204 AGATCGATGAGGTCTGCGCGCTGGAGTCGTGCAGCTGGGGCCTGTTCCAGGTCATGGGCT 1263 Query 47212 ACCACTGGAAGCTGATGGGGTACCCTACCCTTCAAGCTTTCGTAAACGCCATGTACGCCA 47271 |||||||| || |||| || | | | | || | ||||| | | |||| | |||| Sbjct 1264 ACCACTGGCAGGACCTGGGCTATGCCAGCGTCCAGGACTTCGTCACCCGCATGCAGGCCA 1323 Query 47272 GCGAAGGAGCCCAGATGGACGCCTTCTGCCGGTTCATCAAGGC 47314 ||||| | | ||| ||||||| ||| ||| ||| ||||||| Sbjct 1324 GCGAAAGCGAGCAGCTGGACGCATTCGTCCGCTTCGTCAAGGC 1366 >seq27013 Length=32742 Score = 95.1 bits (104), Expect = 7e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 66428 CACAAGCAGATTGTCAACCGGGTGCTTGAGCCTTTCCAGATGATGAAGACGGTAGTGACC 66487 ||||| |||||||| ||||| || |||| ||||||||||||||||| || || |||| Sbjct 8916 CACAAACAGATTGTGAACCGCTTGGTTGAACCTTTCCAGATGATGAAAACTGTGATGACA 8975 Query 66488 GCTACCGAGTGGGAGAACTTCTACTGGCTCCGTGATCACGAAGACGCCCAGCCGGAG 66544 || || ||| ||| ||||||| |||| | ||| ||||||| || ||||| ||| Sbjct 8976 GCAACAGAGCTGGATAACTTCTTCTGGTTGCGTTTGGACGAAGATGCACAGCCTGAG 9032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 270111172755200