Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq28361 84.2 2e-11 seq39598 82.4 8e-11 >seq28361 Length=3781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 13410 GGTTCACGAGTCATTTGCAGCTCTAATTGCTCGACGTGGTTGTTATAAATATGCACATCA 13469 ||||| || |||| |||||| ||||| | ||||||| | |||| ||| ||| Sbjct 2062 GGTTCGCGCGTCAGTTGCAGGCGCGCCTGCTCCAGGTGGTTGCTGTAAAGGTGCGTATCG 2121 Query 13470 CCGCATGAGTATACAAGTTCTCCAACCGCTAGACCTGTCATTTTCGCAACGATATGTACT 13529 |||| | | |||| || || ||| | ||| | | || ||| || ||||| || Sbjct 2122 CCGCCGGTCCAGACAAAGTCACCGACCTCCAGATCGCACTGTTGCGCGACCATATGCACC 2181 Query 13530 AATAGAGCATAACTAGCGATGTTAAATGGAAGCCCCAGGAATACGTCATTTGAGCGCATT 13589 | || ||||| || ||||||||||| || ||||||||||| | ||| || ||| | Sbjct 2182 AGCAGCGCATAGCTGGCGATGTTAAACGGCAGCCCCAGGAAAATGTCGCAGGAACGC-TG 2240 Query 13590 GTGAA-CATACAGCTTAGTTTTCCGTCCGCTACATAGAACTGGAATACGTAATGACACGG 13648 || || | |||| || | || ||||| || ||||||||||| | | ||| ||||| Sbjct 2241 GTAAAGCTGACAGGAGAGCCTGCCATCCGCGACGTAGAACTGGAAAAAGGCATGGCACGG 2300 >seq39598 Length=301 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 27094 GCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACAGTC 27153 |||||||||||||||| | ||||||||||||| ||||||| |||||| |||||| | | Sbjct 1 GCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGGGGGTTCAAATCCTCTCGCC 60 Query 27154 GGCACCAT 27161 |||||||| Sbjct 61 GGCACCAT 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518980531448000