Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq32038 253 7e-63 seq8276 172 2e-38 seq102312 141 3e-29 seq73638 125 2e-24 seq73294 120 1e-22 seq36676 104 7e-18 seq35373 100 9e-17 seq35294 95.1 4e-15 >seq32038 Length=828 Score = 253 bits (280), Expect = 7e-63 Identities = 338/464 (73%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 37773 GGCGGTCAGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGAC 37832 ||||||||| ||||||||||| || | | || |||||||| | |||| | Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCG-GTGCGACGGC--GGGTGAAGTTCGCACTCGACTC 404 Query 37833 CGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGC 37892 ||||| ||||| || ||| | ||||||||| | ||||||| ||||||| || Sbjct 403 GTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGCGC 344 Query 37893 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTA 37952 | ||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 343 CGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGCCGGGTA 284 Query 37953 GTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTT 38012 || | ||| ||||| || || | ||| | ||||| ||||| ||||| ||||||| ||| Sbjct 283 GTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTGCGACTT 224 Query 38013 GTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTC 38072 |||||| ||||| ||| ||| || | ||| | ||||||| | ||| || |||| Sbjct 223 GTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACAGCTTGTCGATCGCGGCCTG 164 Query 38073 CGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTC 38132 || | || | |||||| | || ||||||| || ||| |||| | ||| |||| Sbjct 163 CGGGAAGTCGCGCTCGAGCATGCCGGCCTGGAAGCCGGCGTACTGCTTGTCGAGCTCCTC 104 Query 38133 GGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGC--CTG-ACCGAGGGTGTACCC 38189 ||||||||||||||| ||||| || ||| |||||| | | ||||||||| |||| Sbjct 103 CTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGGGTGAACCC 44 Query 38190 GGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCTGGTAGA 38230 || || | |||||| ||| | |||||||||||||||| Sbjct 43 CGCGAGCACCTGCGCGATGGCCAT---GACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 172 bits (190), Expect = 2e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||| ||| | |||||||||||||| || || ||||| ||||| |||||||| | Sbjct 660 GAAGTCGACGTCGAAGTCGGGCATGGAGATCCGTTCGGGGTTGAGGAAGCGCTCGAACAG 719 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || | | | | || || |||||||||||| ||| |||| ||| |||| ||||| Sbjct 720 CAGGTCATAGGCCAGCGGATCGAGGTCGGTGATCTTGAGTACGTAGGCGACCAGGGAGCC 779 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | ||||| || || ||||||||| ||||||||| | ||||||||| |||||| Sbjct 780 GGCACCCGAGCCCCGGCCGGGGCCGACCGGCACGCCGTTGTTCTTCGCCCACTTGATGAA 839 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 ||| |||| ||||||||| ||||| ||||||||| |||| ||||||| |||| Sbjct 840 GTCCATCACGATGAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATGTCGAGCTCG 897 >seq102312 Length=400 Score = 141 bits (156), Expect = 3e-29 Identities = 244/344 (71%), Gaps = 19/344 (6%) Strand=Plus/Minus Query 39834 GGCCTCCTCGTACTGGCCGAGGTTGAGCCGGGTCATCACTGCGCCACCG--GGGCATCCC 39891 |||||| ||||||||||| ||| ||||| ||| ||| | || ||| ||||| ||| Sbjct 390 GGCCTCGTCGTACTGGCCCAGGCGCAGCCGCGTCTGCAC--CTCCCCCGACGGGCAGCCC 333 Query 39892 GTGGTGCCGATCAGGCCCTCTGCGTGCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTAC 39951 |||||| |||| ||||| | || || || | ||||||| ||||||||| || | Sbjct 332 GTGGTGGCGATGAGGCCGGAGGAGTACTGCGAGAGCAGCTCGCGGTCCATGCGGGG---C 276 Query 39952 TTCCCGAGCAGGCCCTCGCTGTACGAGCGAGA--GGAGAGCTTGAACAGGTTGTGCAGGC 40009 || ||| | ||||||| | | || || | | ||||||||||||||||| || Sbjct 275 TTGTAGAGGAAGCCCTCGAGG--CTGGCCAGGCTGCTCATCTTGAACAGGTTGTGCATGC 218 Query 40010 CGGTCTTGTTCGTGGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGT 40069 ||||| ||||| ||| ||||| |||||||||||||| | || ||| ||||||| Sbjct 217 CGGTCGTGTTCTCGGCCAGCATCGTCATGTGGGTGTACGAGCCGGCACCCGAGACGTCGT 158 Query 40070 -ACCGCTTCTGC--TCGGGCGTGCCCCACTGGACCCGCTCCTGGTC--GGAACG--GTGC 40122 ||| | || | ||| |||||||| || ||| || ||| || || ||| Sbjct 157 CGCCGGAGCGGCCGTTGGGGTCGCCCCACTTCACGCGCGTCTTGTCCTGGCGCGCCGTG- 99 Query 40123 CCCGGTGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCC 40166 ||||| | | ||||||||||| |||||||| ||||||||||| Sbjct 98 CCCGGCGTCAGGTACGCCTCGACGCCGATGATCGGCTTGACCCC 55 >seq73638 Length=482 Score = 125 bits (138), Expect = 2e-24 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 39108 GACACGCT-CAGGGTTCAGGAACCGCTCGAAGATG-AGCCCGTGAGGGATGGGGTCCAGG 39165 |||||||| | ||||| ||||| |||||||| | | || || || | ||||||||| Sbjct 3 GACACGCTTCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAGG 62 Query 39166 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG-AGCCGCGCCCAGGGCC 39224 ||||||||| || || |||| |||||||||| | ||| | ||||||| || ||||| Sbjct 63 TCGGTGATCTGCAGCGCCCACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGGGCC 122 Query 39225 GACCCAC-ACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACG 39283 || | | ||| | | ||| |||| |||||||||||| |||| |||||||| Sbjct 123 GATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAGC 182 Query 39284 ACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGA 39325 ||||| ||||||| | ||||| |||| | |||| |||||| Sbjct 183 CGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACTCGA 224 >seq73294 Length=656 Score = 120 bits (132), Expect = 1e-22 Identities = 201/285 (71%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTG-ACGTACCGGATCACGTCGCCAC 39067 |||||| || |||| || | || || || || || || || |||||||| || | | Sbjct 158 GATCTGCGCCACCTGTTCGCGCCCATATTTG-CGCTGCACATAGCGGATCACCTCTTCGC 216 Query 39068 GGCGA--CGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAG 39125 ||||| | | || ||||||||| || | ||||||||| || || || || ||||| || Sbjct 217 GGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGAG 274 Query 39126 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39185 ||| || ||||||| ||| | | | || || | ||||| ||| || ||||| Sbjct 275 GAAGCGTTCGAAGAGCAGCGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGTA 334 Query 39186 CGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTT 39245 ||| ||||||| || || | || || || |||||||||||| | | | || ||| Sbjct 335 GGCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCTT 394 Query 39246 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAA 39290 ||||| |||||||||||| |||| |||||||| | |||||| Sbjct 395 TGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq36676 Length=975 Score = 104 bits (114), Expect = 7e-18 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 ||| |||| ||| | ||||||||||| || || |||||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || || | ||| || || ||||| || ||| || || || ||||||| || Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCATAGGCCACCAGCGAACC 725 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 ||| | || ||||| || || || ||| |||||||| || |||| ||| ||| || Sbjct 726 GGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAAA 785 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39305 || |||| |||||||| ||||| |||||||||||||| Sbjct 786 CTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq35373 Length=484 Score = 100 bits (110), Expect = 9e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 39668 GCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGT 39727 ||||||||||| |||||| ||| | || | | || |||||| || || ||| Sbjct 8 GCGTGTAGTGCAGGTCGTTCGTGCCGACGAGCGGGATGCCGAGGTCCTTCGAGATCCGGA 67 Query 39728 AGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGA 39787 || ||| ||| ||| || ||||||||||| || ||||||||||||||||| |||| Sbjct 68 CGACGTCCTCGATGACCCGGCGCTCGATCTCGAGCCCGTGGTCCATGATCTCGGCGAAGT 127 Query 39788 AGTTGTCCTTCCCGAAGATCTCCCG 39812 |||||||||| |||||||| || || Sbjct 128 AGTTGTCCTTACCGAAGATGTCGCG 152 >seq35294 Length=305 Score = 95.1 bits (104), Expect = 4e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38119 TTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCG 38178 ||||||| | | || ||||||||||| |||||||||||||| || | ||| ||| || Sbjct 277 TTGGCCATCTCTTCAGGCTTCTTCTTACCCATGGCGCGACGCAGCATGTCCGCCCCGCCC 218 Query 38179 AGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGC 38238 || || || |||| ||||| ||| || || | ||||| |||||||| | ||| | Sbjct 217 AGCGTATAGCCGGACAGGACCTGGGCAATCTGCATGACCTGTTCCTGGTACAGGATAATG 158 Query 38239 CCGAAGGTCGGGTCCAG 38255 ||| ||||||| ||||| Sbjct 157 CCGTAGGTCGGCTCCAG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159468070674600