Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028894.1 Length=170336 Score E Sequences producing significant alignments: (Bits) Value seq31280 123 3e-23 seq49234 95.1 1e-14 >seq31280 Length=10079 Score = 123 bits (136), Expect = 3e-23 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 140715 GGACTAAACAGAGTGATGTAATCATTCTTGGCCAGTCGTTCCATCATCAGGTTATTCAAC 140774 || |||||||| ||||||| || ||| ||| || | ||||| || || | | Sbjct 1288 GGGCTAAACAGCGTGATGTCCTCGCCCTTCAGCAGGCGCTGGTACATCATTTTGTTGAGC 1347 Query 140775 TGGACACCATAGTCCATATGCCTGATACGGTTTTCTTCAACGCCTTTGTTGTTCTTCAGA 140834 || ||||| |||||||| || | | ||||| |||| || || |||||| ||||| Sbjct 1348 TGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGG 1407 Query 140835 ACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGCGCCGCC 140893 || | | |||| ||||||| |||||| || ||||| | ||| || || |||||||| Sbjct 1408 ACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGCGCCGCC 1466 Query 140894 ACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 140953 ||||| || || || ||||| ||||| || || || ||||| || || ||||||| || Sbjct 1467 ACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGAT 1526 Query 140954 AACACCAGTATG 140965 | ||| ||||| Sbjct 1527 ACAACCGGTATG 1538 >seq49234 Length=879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 58591 TTTATCATAAAAGAAGGTGACATGACCAGTCCCTAAAAGAAAAGATGATGGGATTTTAAA 58650 ||||| ||| || || || |||||||| || |||||| | | | | | |||||||| Sbjct 363 TTTATTATAGAA-AATGTAACATGACCTGTACCTAAATGTAGGTAGTACTG-ATTTTAAA 420 Query 58651 GTCAGAAACCTTTTTACCATTTTGTACATGTTTGCGAACCGCACCAAACACGCGAGGAAG 58710 ||| | ||||||| |||||| || || ||||| ||||| || || || || | Sbjct 421 ATCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAA 480 Query 58711 CTCACGATATTCAGCCATAAGATGTTGGTCAGCAAGTTC 58749 ||||| |||||||||||||||||||||||||| | ||| Sbjct 481 TTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTC 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544059617248000